Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e19
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    31   0.73 
U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi dom...    27   9.0  

>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
            protein F07G11.9 protein.
          Length = 2025

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 569  CAPEYPGTASCKSAGVCSSAGQQMDC 646
            C P+ PG + C +AG C S  +  DC
Sbjct: 1907 CDPDDPGFSCCGAAGYCGSGKEYCDC 1932


>U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical protein
            T01C4.1 protein.
          Length = 1484

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 569  CAPEYPGTASCKSAGVCSSAGQQMDC 646
            C P+ PG + C +AG C S  +  +C
Sbjct: 1370 CDPDDPGFSCCGAAGYCGSEEEYCEC 1395


>U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical
           protein F28B4.2 protein.
          Length = 860

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 618 HTPADLHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSVQE 496
           + P   ++ VP Y       P TE+    G ++  W SV+E
Sbjct: 25  YVPPQGYEGVPRYRAIDPDRPKTESSEMSGADHLEWESVKE 65


>AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi
           domain-containing protein2 protein.
          Length = 975

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 458 TLPVPSNRNTLSHSCTERHAQLFLPP 535
           TLPV S   T   +C +R  QL +PP
Sbjct: 41  TLPVTSEHKTAHDACIKRLEQLEIPP 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,417,988
Number of Sequences: 27780
Number of extensions: 314470
Number of successful extensions: 879
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)