Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11e18
(323 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 28 0.30
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 27 0.53
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 1.2
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 1.6
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 1.6
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 25 2.1
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 2.1
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 25 2.1
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 25 2.8
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po... 25 3.7
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 24 4.9
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 24 6.5
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 24 6.5
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 23 8.6
SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomy... 23 8.6
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 23 8.6
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 23 8.6
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 23 8.6
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 23 8.6
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 28.3 bits (60), Expect = 0.30
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -1
Query: 266 CCNYQLSHILFCITIQRCH*CILNFPTLPCPCFAAD 159
CCN++ H + H +N TL C C++ D
Sbjct: 109 CCNHESDHSRKHFEKNKKHCVFVNIITLKCHCYSCD 144
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 27.5 bits (58), Expect = 0.53
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -2
Query: 319 FFIIKFGIYLYTIFLVILVV 260
FF++ FG+Y +T+ L +LV+
Sbjct: 21 FFLVVFGLYSFTLILHLLVI 40
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 1.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 123 LQHIAPSITL*FFKYVL*MYFTSRFLSA 40
L H++P I+ +KY L F S F+ A
Sbjct: 1473 LHHVSPDISTHLYKYYLRRNFVSSFIDA 1500
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 1.6
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +2
Query: 107 GAMCC----NGDCLAVVVLDRNQLQNTDMEVLESLEYTSDNVELLCKKVCV 247
G CC NG L L R +N+D +L S YT N E L K + +
Sbjct: 2404 GFYCCVVNVNGKILVKDKLSRIYNENSDENILCSCFYTGANSEWLHKNLFI 2454
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 1.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 258 LSTITHTFLHNNSTLSLVYSKLSNTSMSVFC 166
L T+THT HN L S L T ++C
Sbjct: 4029 LPTMTHTLPHNRFRLFFFLSWLHATLAEIYC 4059
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.4 bits (53), Expect = 2.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 149 LDRNQLQNTDMEVLESLEYTSDNVE 223
+D N +++D++ LEYT+DN E
Sbjct: 8 IDPNSSEDSDIQEDAELEYTADNPE 32
>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 430
Score = 25.4 bits (53), Expect = 2.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 63 FTSRFLSALGTSNTLAVR 10
FT FLS +G SNT+ V+
Sbjct: 151 FTKSFLSKIGESNTITVK 168
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 2.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 186 CWKV*NTLVTTLNCYAKKY 242
CWK T+V L Y KKY
Sbjct: 491 CWKSAKTIVQLLKIYFKKY 509
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.0 bits (52), Expect = 2.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 191 ESLEYTSDNVELLCKKVCVIVDNYNKYYQKN 283
+S+EY +N++ + K+ +VD N YY +
Sbjct: 229 DSVEYV-ENIQYIDGKIQELVDKMNNYYNND 258
>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 207 VYSKLSNTSMSVFCS 163
VYS L+NT++ FCS
Sbjct: 133 VYSSLANTTLEEFCS 147
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 24.2 bits (50), Expect = 4.9
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 110 AMCCNGDCLAVVVLDRNQLQNTDMEVLESL--EYTSDNVELLCKKVCVI 250
A C D L L Q NTD +V ++L ++D+ +L+ K C++
Sbjct: 204 ASCARWDSLFTFSLSLFQTGNTDWKVCKALLDSASNDDSKLVPLKDCIL 252
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 23.8 bits (49), Expect = 6.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 191 ESLEYTSDNVELLCKKVCVIVDNYNKYYQKNCV 289
+SL D +E+ C+K + + NK YQ+ +
Sbjct: 272 KSLNSYVDKLEVYCQKRKSLFEELNKQYQEQSI 304
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 23.8 bits (49), Expect = 6.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 225 NSTLSLVYSKLSNTSMSVFCS*FRSNTTTAKQS 127
NST S+ +SN++ S+ + TTTAK S
Sbjct: 84 NSTTSMSGMNMSNSTTSMSGMNMTNTTTTAKAS 116
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 23.4 bits (48), Expect = 8.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 55 PLFERVRNKQYISR 14
P+F R RN+ Y+SR
Sbjct: 325 PIFWRTRNESYVSR 338
>SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 133
Score = 23.4 bits (48), Expect = 8.6
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +2
Query: 149 LDRNQLQNTDMEVLESLEYTSDNVELLCKKVCVIVDNYNKY 271
+++ ++ EV +SL+Y+ CV+ D+ N Y
Sbjct: 1 MEKEDIEKLFQEVKKSLQYSYCPYSNFAVGACVVSDDKNTY 41
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 23.4 bits (48), Expect = 8.6
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -3
Query: 153 SNTTTAKQSPLQHIAPSI 100
SN + K SP++H++P++
Sbjct: 198 SNLPSNKSSPVKHVSPNV 215
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 23.4 bits (48), Expect = 8.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 112 RTFNYTVIFQICIINVFHVPL 50
R ++ V+FQIC I +F + L
Sbjct: 197 RFSSFNVVFQICTILIFIISL 217
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 23.4 bits (48), Expect = 8.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 179 MEVLESLEYTSDNVELLCKKVCVIVDNYNKY 271
+E+L+ + +VE ++ IVD+Y+KY
Sbjct: 490 LELLDKHQTALSSVENRLDEISEIVDSYHKY 520
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 23.4 bits (48), Expect = 8.6
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 154 PKSAAKHGHGSV 189
PKS A +GHGSV
Sbjct: 393 PKSQAAYGHGSV 404
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,598
Number of Sequences: 5004
Number of extensions: 30432
Number of successful extensions: 104
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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