Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11e18
(323 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0466 - 24602715-24603964,24605762-24605944,24606381-246072... 33 0.068
01_07_0061 + 40818077-40818241,40818494-40818716,40819015-408192... 29 1.1
05_01_0520 - 4492182-4492780,4496886-4497951 28 1.5
07_01_0117 + 894314-896677 28 1.9
12_02_0586 + 20831933-20832378,20832434-20833031,20833813-208339... 27 4.5
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275... 27 4.5
06_01_1136 + 9407282-9407663,9408075-9408227,9408336-9408539,940... 26 5.9
04_04_0075 - 22542486-22542882,22543181-22543362,22543452-225436... 26 5.9
04_04_1563 - 34445832-34445891,34445981-34446097,34447363-344474... 26 7.8
03_01_0641 - 4697273-4697672,4697921-4698102,4698218-4698403,469... 26 7.8
02_03_0298 - 17428616-17428738,17428822-17428992,17429913-174300... 26 7.8
>03_05_0466 -
24602715-24603964,24605762-24605944,24606381-24607286,
24609446-24609516,24609737-24609846,24610073-24610108,
24610211-24610278,24610655-24610760,24610850-24610997,
24611091-24611218,24611319-24611454,24611924-24612072
Length = 1096
Score = 32.7 bits (71), Expect = 0.068
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 206 CILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHLQLHCNFSNMY 75
C+++ T PCP + P+R N CNTS L +C ++
Sbjct: 23 CLIHPSTPPCPVCSHSLSLPPERNPNYRCNTSLLIDYCQHDGIH 66
>01_07_0061 +
40818077-40818241,40818494-40818716,40819015-40819263,
40819455-40819505,40819611-40819871,40819994-40820046,
40820234-40820348,40820475-40820696,40821280-40822253
Length = 770
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = +2
Query: 2 IMHLTA--NVLLVPNA--LKKRDVKYIYNTYLKNYSVIEGAMC 118
++HL NV+ PNA LKK V Y+YN KN+ E C
Sbjct: 713 VVHLLGETNVVAEPNADFLKKIIVDYVYNFIRKNFRQPEKITC 755
>05_01_0520 - 4492182-4492780,4496886-4497951
Length = 554
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 92 YSVIEGAMCCNGDCLAVVVLDRNQLQNTDMEVLESLEYTSD 214
Y V +G + + DCL V DR+ L + VLE +Y+SD
Sbjct: 257 YGVDDGFIDVSQDCLCFVNTDRDDLYKLSVWVLE--DYSSD 295
>07_01_0117 + 894314-896677
Length = 787
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 266 CCNYQLSH-ILFCITIQRCH*CILNFPTLPCPCF 168
CC + H +L+C+ C++ +PT+ CPC+
Sbjct: 469 CCYKPVFHFMLYCVR------CMMRWPTICCPCY 496
>12_02_0586 +
20831933-20832378,20832434-20833031,20833813-20833986,
20834208-20834570
Length = 526
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 110 AMCCNGDCLAVVVLD--RNQLQNTDMEVLESLE-YTSDNVELLCKKVCVI 250
A CC +CL++ + D RNQ N+ M + + E + + + L C ++ I
Sbjct: 391 AKCCKAECLSINISDQGRNQCVNS-MCICDQPEGWEKETISLECLRIVEI 439
>03_05_0776 +
27625122-27625415,27627226-27627273,27627455-27627514,
27627633-27627802,27627901-27627973,27628096-27628161,
27628262-27628345,27628681-27628758,27629009-27629092,
27629835-27630137,27630227-27630397,27630971-27631161,
27631284-27631686,27632246-27632497,27632577-27633077,
27633181-27633278,27633400-27633499,27633722-27633867,
27633973-27634138
Length = 1095
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 111 APSITL*FFKYVL*MYFTSRFLSA 40
AP+IT YVL M+FT+ F+SA
Sbjct: 9 APAITKFLKPYVLKMHFTNNFVSA 32
>06_01_1136 +
9407282-9407663,9408075-9408227,9408336-9408539,
9408709-9409174,9409434-9409575
Length = 448
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 300 VFIYTQFFW*YLL*LSTITHTFLHNNSTLSLVYSKLSNTSMSV 172
V+I T FF L ST++ + +S L + YS++ N ++ V
Sbjct: 274 VYITTSFFGYLLFGESTLSDVLANFDSNLGIPYSQMLNDAVRV 316
>04_04_0075 -
22542486-22542882,22543181-22543362,22543452-22543637,
22543959-22544057,22546198-22546314,22547739-22547855
Length = 365
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 299 YLFIHNFFGNTC-CNYQLSHILFCI 228
Y + NF GNTC CN L + FCI
Sbjct: 22 YFGLENF-GNTCYCNSVLQALYFCI 45
>04_04_1563 -
34445832-34445891,34445981-34446097,34447363-34447450,
34447626-34447675,34447848-34448285
Length = 250
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 106 RCDVLQWRLFGRCGVGPKSAAKHGHGSVGKF 198
R DV GRCG GP A G F
Sbjct: 61 RVDVASCGCLGRCGAGPNFGASVSGGGAAVF 91
>03_01_0641 -
4697273-4697672,4697921-4698102,4698218-4698403,
4699287-4699385,4700028-4700144,4700698-4700814
Length = 366
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 299 YLFIHNFFGNTC-CNYQLSHILFCI 228
Y + NF GNTC CN L + FC+
Sbjct: 22 YFGLENF-GNTCYCNSVLQALYFCV 45
>02_03_0298 -
17428616-17428738,17428822-17428992,17429913-17430014,
17431654-17431764,17432142-17432228,17432551-17432588,
17432830-17432833,17433280-17433419,17434189-17434320,
17435289-17435354,17435966-17436013,17436055-17436160
Length = 375
Score = 25.8 bits (54), Expect = 7.8
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +2
Query: 98 VIEGAMCCNGDCLAVVVLDRNQLQNTDMEVLESLEYTSDNVELLCKKVCVIVDNY-NKYY 274
+IE +GDC++ + N ME + SDN E + K+ + + NK
Sbjct: 205 LIEAGAVVSGDCISTAAKGGSNECNYSMEETGANRNISDNGEPVSKRKATELKSLGNKAV 264
Query: 275 QKNCV*INTKFYYK 316
+K T FY K
Sbjct: 265 EKKDYLSATGFYSK 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,562,530
Number of Sequences: 37544
Number of extensions: 172462
Number of successful extensions: 461
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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