Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11e18
(323 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX538174-1|CAD98049.1| 723|Homo sapiens hypothetical protein pr... 29 3.2
BC130576-1|AAI30577.1| 723|Homo sapiens dpy-19-like 4 (C. elega... 29 3.2
BC126193-1|AAI26194.1| 723|Homo sapiens dpy-19-like 4 (C. elega... 29 3.2
BC110870-1|AAI10871.1| 723|Homo sapiens dpy-19-like 4 (C. elega... 29 3.2
AK123682-1|BAC85675.1| 723|Homo sapiens protein ( Homo sapiens ... 29 3.2
AK123618-1|BAC85664.1| 396|Homo sapiens protein ( Homo sapiens ... 29 3.2
DQ860102-1|ABI64147.1| 1159|Homo sapiens RAD51-associated protei... 27 9.8
AL590103-11|CAI12135.1| 239|Homo sapiens heparan sulfate proteo... 27 9.8
AL137533-1|CAB70796.1| 198|Homo sapiens hypothetical protein pr... 27 9.8
AF479675-1|AAL79552.1| 240|Homo sapiens perlecan variant minipe... 27 9.8
AF263918-1|AAF73293.1| 910|Homo sapiens inner nuclear membrane ... 27 9.8
AF112299-1|AAD31593.2| 911|Homo sapiens integral inner nuclear ... 27 9.8
>BX538174-1|CAD98049.1| 723|Homo sapiens hypothetical protein
protein.
Length = 723
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = +2
Query: 20 NVLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCN-GDCLAVVVLDRNQLQNTDMEVLES 196
N+ + + D+ I +Y NY ++E A+C G V D + N M E
Sbjct: 616 NIYQIYSKRSAEDIYKILTSYKANYLIVEDAICNEVGPMRGCRVKDLLDIANGHMVCEEG 675
Query: 197 LEYTSDNVELLCKKVCVIVDNYNKYYQK 280
+ T C +V + Y Y+ +
Sbjct: 676 DKLTYSKYGRFCHEVKINYSPYVNYFTR 703
>BC130576-1|AAI30577.1| 723|Homo sapiens dpy-19-like 4 (C. elegans)
protein.
Length = 723
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = +2
Query: 20 NVLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCN-GDCLAVVVLDRNQLQNTDMEVLES 196
N+ + + D+ I +Y NY ++E A+C G V D + N M E
Sbjct: 616 NIYQIYSKRSAEDIYKILTSYKANYLIVEDAICNEVGPMRGCRVKDLLDIANGHMVCEEG 675
Query: 197 LEYTSDNVELLCKKVCVIVDNYNKYYQK 280
+ T C +V + Y Y+ +
Sbjct: 676 DKLTYSKYGRFCHEVKINYSPYVNYFTR 703
>BC126193-1|AAI26194.1| 723|Homo sapiens dpy-19-like 4 (C. elegans)
protein.
Length = 723
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = +2
Query: 20 NVLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCN-GDCLAVVVLDRNQLQNTDMEVLES 196
N+ + + D+ I +Y NY ++E A+C G V D + N M E
Sbjct: 616 NIYQIYSKRSAEDIYKILTSYKANYLIVEDAICNEVGPMRGCRVKDLLDIANGHMVCEEG 675
Query: 197 LEYTSDNVELLCKKVCVIVDNYNKYYQK 280
+ T C +V + Y Y+ +
Sbjct: 676 DKLTYSKYGRFCHEVKINYSPYVNYFTR 703
>BC110870-1|AAI10871.1| 723|Homo sapiens dpy-19-like 4 (C. elegans)
protein.
Length = 723
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = +2
Query: 20 NVLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCN-GDCLAVVVLDRNQLQNTDMEVLES 196
N+ + + D+ I +Y NY ++E A+C G V D + N M E
Sbjct: 616 NIYQIYSKRSAEDIYKILTSYKANYLIVEDAICNEVGPMRGCRVKDLLDIANGHMVCEEG 675
Query: 197 LEYTSDNVELLCKKVCVIVDNYNKYYQK 280
+ T C +V + Y Y+ +
Sbjct: 676 DKLTYSKYGRFCHEVKINYSPYVNYFTR 703
>AK123682-1|BAC85675.1| 723|Homo sapiens protein ( Homo sapiens
cDNA FLJ41688 fis, clone HCASM2007047. ).
Length = 723
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = +2
Query: 20 NVLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCN-GDCLAVVVLDRNQLQNTDMEVLES 196
N+ + + D+ I +Y NY ++E A+C G V D + N M E
Sbjct: 616 NIYQIYSKRSAEDIYKILTSYKANYLIVEDAICNEVGPTRGCRVKDLLDIANGHMVCEEG 675
Query: 197 LEYTSDNVELLCKKVCVIVDNYNKYYQK 280
+ T C +V + Y Y+ +
Sbjct: 676 DKLTYSKYGRFCHEVKINYSPYVNYFTR 703
>AK123618-1|BAC85664.1| 396|Homo sapiens protein ( Homo sapiens
cDNA FLJ41624 fis, clone CTONG3009328. ).
Length = 396
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = +2
Query: 20 NVLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCN-GDCLAVVVLDRNQLQNTDMEVLES 196
N+ + + D+ I +Y NY ++E A+C G V D + N M E
Sbjct: 289 NIYQIYSKRSAEDIYKILTSYKANYLIVEDAICNEVGPMRGCRVKDLLDIANGHMVCEEG 348
Query: 197 LEYTSDNVELLCKKVCVIVDNYNKYYQK 280
+ T C +V + Y Y+ +
Sbjct: 349 DKLTYSKYGRFCHEVKINYSPYVNYFTR 376
>DQ860102-1|ABI64147.1| 1159|Homo sapiens RAD51-associated protein 2
protein.
Length = 1159
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +2
Query: 86 KNYSVIEGAMCCNGDCLAVVVLDR-NQLQNTDMEVLESLEYTSDNVELL--CKKVC 244
KN++++E A +CL VL R + QN D V L N ++ CK C
Sbjct: 365 KNFAILENANWEEAECLDSYVLTRLEKSQNWDCNVRHILRRNRGNCWIINNCKTKC 420
>AL590103-11|CAI12135.1| 239|Homo sapiens heparan sulfate
proteoglycan 2 protein.
Length = 239
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 191 PTLPCPCFAADFGPTPQRPNNRH 123
PTL PCF GP P P H
Sbjct: 192 PTLLSPCFPVPSGPCPVGPRRPH 214
>AL137533-1|CAB70796.1| 198|Homo sapiens hypothetical protein
protein.
Length = 198
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -1
Query: 149 TPQRPNNRHCNT-SHLQLHCNFSN 81
TP +P+N+H N+ SHL+L +N
Sbjct: 170 TPLKPSNKHMNSMSHLRLRTGLTN 193
>AF479675-1|AAL79552.1| 240|Homo sapiens perlecan variant miniperl
protein.
Length = 240
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 191 PTLPCPCFAADFGPTPQRPNNRH 123
PTL PCF GP P P H
Sbjct: 193 PTLLSPCFPVPSGPCPVGPRRPH 215
>AF263918-1|AAF73293.1| 910|Homo sapiens inner nuclear membrane
protein protein.
Length = 910
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -1
Query: 149 TPQRPNNRHCNT-SHLQLHCNFSN 81
TP +P+N+H N+ SHL+L +N
Sbjct: 882 TPLKPSNKHMNSMSHLRLRTGLTN 905
>AF112299-1|AAD31593.2| 911|Homo sapiens integral inner nuclear
membrane protein MAN1 protein.
Length = 911
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -1
Query: 149 TPQRPNNRHCNT-SHLQLHCNFSN 81
TP +P+N+H N+ SHL+L +N
Sbjct: 883 TPLKPSNKHMNSMSHLRLRTGLTN 906
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,062,155
Number of Sequences: 237096
Number of extensions: 1020075
Number of successful extensions: 2096
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2096
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1627597384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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