Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11e18
(323 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99280-3|CAE18018.1| 215|Caenorhabditis elegans Hypothetical pr... 29 0.77
Z70718-10|CAA94679.1| 512|Caenorhabditis elegans Hypothetical p... 28 1.3
Z68879-11|CAA93090.1| 512|Caenorhabditis elegans Hypothetical p... 28 1.3
Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical pr... 27 3.1
U40938-6|AAA81698.1| 655|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical pr... 27 4.1
L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell m... 27 4.1
L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell m... 27 4.1
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 27 4.1
Z71181-4|CAA94897.1| 486|Caenorhabditis elegans Hypothetical pr... 26 5.4
Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical pr... 26 5.4
AF098986-3|AAC67424.1| 832|Caenorhabditis elegans Hypothetical ... 26 5.4
AF016418-8|AAK18897.1| 330|Caenorhabditis elegans Serpentine re... 26 5.4
AF000197-3|AAB52898.2| 109|Caenorhabditis elegans Hypothetical ... 26 5.4
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 26 7.2
AF016418-2|AAK18901.1| 893|Caenorhabditis elegans Hypothetical ... 26 7.2
Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z72510-1|CAA96651.1| 572|Caenorhabditis elegans Hypothetical pr... 25 9.5
U61953-4|AAC48076.1| 326|Caenorhabditis elegans Hypothetical pr... 25 9.5
AF036703-4|AAB88555.1| 261|Caenorhabditis elegans Hypothetical ... 25 9.5
AF003385-4|AAB54244.1| 333|Caenorhabditis elegans Hypothetical ... 25 9.5
>Z99280-3|CAE18018.1| 215|Caenorhabditis elegans Hypothetical
protein Y57G11B.7 protein.
Length = 215
Score = 29.1 bits (62), Expect = 0.77
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 206 CILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 105
CILNF LP A T PN+ HC+ +L
Sbjct: 3 CILNFLLLPLVVLAQSSCDTDGIPNHLHCSIKNL 36
>Z70718-10|CAA94679.1| 512|Caenorhabditis elegans Hypothetical
protein C04G2.11 protein.
Length = 512
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = +2
Query: 23 VLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCL--AVVVLDRNQLQNTDMEVL-- 190
+ L N L+ R V I+NT L + ++ GD L + +L+ +L N ++ L
Sbjct: 92 ITLFKNVLQIRGVLQIWNTQLTSAPFMKNIQNITGDPLDKGLSILNNTKLNNLNISSLSN 151
Query: 191 -ESLEYTSDNVELLCKKVCVIV 253
++ +N L +K+C I+
Sbjct: 152 SNNIVEIKNNPNLNLQKMCSII 173
>Z68879-11|CAA93090.1| 512|Caenorhabditis elegans Hypothetical
protein C04G2.11 protein.
Length = 512
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = +2
Query: 23 VLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCL--AVVVLDRNQLQNTDMEVL-- 190
+ L N L+ R V I+NT L + ++ GD L + +L+ +L N ++ L
Sbjct: 92 ITLFKNVLQIRGVLQIWNTQLTSAPFMKNIQNITGDPLDKGLSILNNTKLNNLNISSLSN 151
Query: 191 -ESLEYTSDNVELLCKKVCVIV 253
++ +N L +K+C I+
Sbjct: 152 SNNIVEIKNNPNLNLQKMCSII 173
>Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical protein
W09D10.2 protein.
Length = 1335
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 109 TFNYTVIFQICIINVFHVPLF 47
TF + ++ Q+ I+N FH+ LF
Sbjct: 1176 TFGHLLVTQLIIVNTFHLALF 1196
>U40938-6|AAA81698.1| 655|Caenorhabditis elegans Hypothetical
protein D1009.1a protein.
Length = 655
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 79 CIINVFHVPLFERVRNKQYISRQMH 5
CI N+ +P+F+ R K IS ++H
Sbjct: 183 CITNINLLPMFKAAREKNLISDEIH 207
>Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical protein
R09A8.1 protein.
Length = 1095
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 167 QNTDMEVLESLEYTSDNVELLCKKVCVIVD 256
+N M + L+ + ++ L C KVCVI D
Sbjct: 1003 ENASMSGRQPLDTSRKHMFLFCNKVCVITD 1032
>L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell
migration protein10, isoform b protein.
Length = 650
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 203 ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 105
+ + TLP P A + TPQ+P H + +HL
Sbjct: 66 VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 98
>L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell
migration protein10, isoform a protein.
Length = 667
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 203 ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 105
+ + TLP P A + TPQ+P H + +HL
Sbjct: 83 VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 115
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 203 ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 105
+ + TLP P A + TPQ+P H + +HL
Sbjct: 195 VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 227
>Z71181-4|CAA94897.1| 486|Caenorhabditis elegans Hypothetical
protein K07C5.4 protein.
Length = 486
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Frame = +2
Query: 134 LAVVVLDRNQL---QNTDMEVLESLEYTSD 214
LAV +LDRN++ +N + E+LE L+ S+
Sbjct: 216 LAVAILDRNKMAENENLENEILEILDNDSE 245
>Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical protein
K02C4.3 protein.
Length = 1307
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -2
Query: 223 FNVVTSVF*TFQHFHVRVLQLISVQHHNGQTIAIATHRTFNYTVIFQICIIN 68
F+ +T + QH + LQLI ++ H + V+ +CII+
Sbjct: 1144 FSTITMIKLIMQHMASKTLQLIDMEFHLSKNERRVRFEDIIREVVSSVCIIH 1195
>AF098986-3|AAC67424.1| 832|Caenorhabditis elegans Hypothetical
protein C36C9.1 protein.
Length = 832
Score = 26.2 bits (55), Expect = 5.4
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = -1
Query: 284 NFFGNTCCNY-QLSH-ILFCITIQRCH*CILNFPTLP--CPCFAADFGPTPQRPNNRHCN 117
+F GN N QL+H I + R + + N ++P P F+ADF Q NN N
Sbjct: 72 SFNGNPSMNGDQLNHSINQSMNAARANRNVFNSSSIPPTAPVFSADFRQNSQTRNNSSWN 131
Query: 116 TSHLQL 99
+L +
Sbjct: 132 QRNLSV 137
>AF016418-8|AAK18897.1| 330|Caenorhabditis elegans Serpentine
receptor, class h protein169 protein.
Length = 330
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 149 TPQRPNNRHCNTSHLQLHCNFSNMYYKCISRP 54
TP + N L L C FS+ Y+ C++ P
Sbjct: 41 TPSKMQNVRNTMFLLHLVCAFSDFYFSCLAIP 72
>AF000197-3|AAB52898.2| 109|Caenorhabditis elegans Hypothetical
protein T21G5.2 protein.
Length = 109
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -2
Query: 322 FFFIIKFGIYLYTIFLVILVVIINYHTYFFA*QFNVVTSVF*TFQHFHVRVLQL 161
F F+I+F I+ Y L V+ NY + V+ S F F F + QL
Sbjct: 30 FIFLIQFVIFTYIHIFSYLCVLFNYFLFIDLSISTVIVS-FSRFIKFQTNLRQL 82
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 8 HLTANVLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCLAVVV 148
+L + + VPN K+ + Y+ N + N +++ A C +AV++
Sbjct: 257 NLKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCATCATTMQIAVML 303
>AF016418-2|AAK18901.1| 893|Caenorhabditis elegans Hypothetical
protein C49G7.7 protein.
Length = 893
Score = 25.8 bits (54), Expect = 7.2
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 317 FYNKIWYLFIHNFF 276
+Y+ WYLF H F+
Sbjct: 719 YYDPFWYLFYHTFY 732
>Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical
protein F14B4.3 protein.
Length = 1127
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 115 VLQWRLFGRCGVGPKSAAKHGHGSVGKF 198
++QWR+ +G K A++HG + F
Sbjct: 842 LIQWRIERNPIIGDKFASRHGQKGINSF 869
>Z72510-1|CAA96651.1| 572|Caenorhabditis elegans Hypothetical
protein F53B7.2 protein.
Length = 572
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 148 HHNGQTIAIATHRTFNYTVIFQICIINVFHV 56
H + T + +R ++ V F +CI NVF++
Sbjct: 2 HRSLSTFSFLINRFDSFFVSFSVCISNVFYL 32
>U61953-4|AAC48076.1| 326|Caenorhabditis elegans Hypothetical
protein R08C7.8 protein.
Length = 326
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = -1
Query: 308 KIWYLFIHNFFGNTCCNYQLSHILFCITIQRCH*CILN 195
K+ +LF+ ++ ++++S +LFC I+ H + N
Sbjct: 81 KVQFLFLGDYVDRGAKSFEVSLLLFCYKIRYPHLNVFN 118
>AF036703-4|AAB88555.1| 261|Caenorhabditis elegans Hypothetical
protein T11F8.1 protein.
Length = 261
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -3
Query: 246 THTFLHNNSTLSLVYSKLSNTSMSVFCS*FRSNTTTA 136
T+ NN L++ N+ ++ + + F SN TTA
Sbjct: 86 TYGIFQNNLLALLIFYNFQNSPLTTYFAFFVSNVTTA 122
>AF003385-4|AAB54244.1| 333|Caenorhabditis elegans Hypothetical
protein R08F11.2 protein.
Length = 333
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 316 FIIKFGIYLYTIFLVILVVIINYHTYFF 233
F I +G Y + IF +V YHT+FF
Sbjct: 158 FAIGYGCY-FAIFTPPIVFSSKYHTWFF 184
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,165,021
Number of Sequences: 27780
Number of extensions: 180654
Number of successful extensions: 597
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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