Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e17
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   4.4  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    26   5.8  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    26   5.8  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   7.7  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    25   7.7  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   7.7  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/73 (21%), Positives = 28/73 (38%)
 Frame = +2

Query: 425 LPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEKTTV 604
           LP  S++   +  + + G   ++ PI+  V  T  +   +PI  T             T 
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT 281

Query: 605 ETLDVSTTQEPKT 643
            T   ++T  P T
Sbjct: 282 STSCTTSTSIPPT 294


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 140  QPVTITDDQFTFPWLNLSPFSLFAPL-WKLIPTF 238
            +P  ITDD    P  N     L +PL W +I ++
Sbjct: 1058 EPYAITDDNDYLPMANTGSLDLVSPLTWTVIDSY 1091


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 223 FPQRSKQTEWRKVQPWERELVIC 155
           F Q   QT+W  + P + + ++C
Sbjct: 190 FNQNKIQTDWSSIDPMDNDKIVC 212


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 186 FSHGNVNWSSVMVTGCTITSLSRAGKAV 103
           FSHG   WS +++ G   T  S   KAV
Sbjct: 155 FSHGRKPWSGILLYGPPGTGKSYLAKAV 182


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = +2

Query: 449 DVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYK 574
           D+  +L ++  L ++AP  +   +T    +V+  +    PY+
Sbjct: 111 DIKKDLATESQLPLSAPFKDESTRTMTDPQVLAYIHQSMPYQ 152


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 411 KNWLANTSWSSSLASCDPWTKIKS 340
           + W+ N+S S  L  CD   KI+S
Sbjct: 187 EKWMKNSSISEYLQECDSMAKIES 210


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = +2

Query: 449 DVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYK 574
           D+  +L ++  L ++AP  +   +T    +V+  +    PY+
Sbjct: 111 DIKKDLATESQLPLSAPFKDESTRTMTDPQVLAYIHQSMPYQ 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,876
Number of Sequences: 5004
Number of extensions: 43928
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)