Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e17
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572...    29   2.6  
03_03_0216 + 15495395-15495566,15495648-15495733,15495824-154958...    29   3.4  
01_01_0092 + 722744-723459,723542-723711,723792-724885                 29   3.4  
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804     29   4.5  
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602...    29   4.5  
01_03_0009 + 11601394-11601666,11602486-11602683,11602809-116030...    28   6.0  
05_05_0149 - 22733703-22736216                                         28   7.9  

>04_04_0201 -
           23555336-23556008,23556097-23556258,23556353-23557206,
           23557452-23557613,23558197-23558649,23559729-23559788,
           23559983-23560058,23561546-23561593,23561948-23562022,
           23562067-23562494
          Length = 996

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +2

Query: 416 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEK 595
           T S+ V+  AA      + +G + VT+ +S+ VD+      V+P+    A  + DE   K
Sbjct: 659 TASMQVHEGAAAAQLGESPEG-VDVTSAVSDEVDRDDKATHVLPLAAAAADGESDELERK 717

Query: 596 ----TTVETLDVST 625
                +  T+D+ST
Sbjct: 718 RRKLDSCATMDMST 731


>03_03_0216 +
           15495395-15495566,15495648-15495733,15495824-15495874,
           15496005-15496390,15496760-15496898,15497540-15497595,
           15497712-15497782,15497876-15498081
          Length = 388

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 559 WRSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTG 675
           WR +   +A    D   LG+ Y   +E++S+S SDC +G
Sbjct: 2   WRFLGASKALTSSDVWFLGKCYKLSSEELSNS-SDCESG 39


>01_01_0092 + 722744-723459,723542-723711,723792-724885
          Length = 659

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 137 VQPVTITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGPRIY 262
           V+ ++  + +F     NL   S   PLW  +P F D+G ++Y
Sbjct: 89  VKDISYNESRFWVVDANLDNSSCPLPLWNNLPYFNDMGTKLY 130


>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
          Length = 1209

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
 Frame = -3

Query: 677 VPVLQSLPLELMSSAPES*K----RPRFLLSSFLQARPS-CTERQSR 552
           V VLQS+P +  SS+P S K     P F+ SS  ++R S C  ++ R
Sbjct: 256 VVVLQSVPTQQQSSSPSSSKLRADAPEFIPSSIKKSRASRCKAKKKR 302


>03_05_0136 +
           21158917-21159939,21160183-21160241,21160259-21160294,
           21160345-21160387,21160582-21160698,21162090-21162179,
           21162329-21162436,21162547-21162588
          Length = 505

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +1

Query: 616 RFYDSGAEDISSSGSDCSTGTRG 684
           R  D+GA D++SSGS+CS  +RG
Sbjct: 176 RRLDAGA-DVASSGSECSDASRG 197


>01_03_0009 +
           11601394-11601666,11602486-11602683,11602809-11603081,
           11603493-11603595,11603666-11603784,11604038-11604214,
           11604443-11605192
          Length = 630

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 47  MFSPRLFAVFIAFAGFTTVTALPARDKEVIVQPV-TITDDQFTFPWLNL 190
           +FS + F VF+  AGF+    L    K  I++P  TI  D+ T  +L L
Sbjct: 129 LFSKKPFPVFLELAGFSPEDVLIEEPKAGILKPAHTILRDECTKSFLVL 177


>05_05_0149 - 22733703-22736216
          Length = 837

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 488 VTAPISENVDKTKNTERV--VPIVETGAPYKKDEPVEKTTVETLDVSTTQEPK 640
           + AP  ENVDK++ T ++   P+ E     + +E +++  VE    S+  E K
Sbjct: 553 MNAPAPENVDKSEETSKISTTPVTEDKEIAEIEEYMKQCQVEEQLASSISEEK 605


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,721,662
Number of Sequences: 37544
Number of extensions: 300921
Number of successful extensions: 921
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)