Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e16
         (756 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    26   0.28 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   4.6  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   8.0  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 292 KISTPSGTISGPPIFLNSLHCKSDKEIE 375
           +IS+PS T SG P FL   + K+D++++
Sbjct: 71  RISSPSSTKSGSPGFLT--YTKADRDVD 96


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 21  YTVHLLHLFMLYIYF 65
           +TVHLL L  +Y +F
Sbjct: 156 FTVHLLFLLCIYHFF 170



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 704 IFYLLEKFMYFTIHAMY 754
           I+Y    F+ FTIH ++
Sbjct: 212 IYYFYSAFIIFTIHLLF 228


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 257 PLSAEPHITFYSKFPPHQELYQDPQYS*IAYIAKVIRKLR 376
           PL   PH   YS  P + + + +P Y      A +  KL+
Sbjct: 17  PLLTPPHNPAYSPPPSYCDPWYNPYYYQYLQNAALYHKLQ 56


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,666
Number of Sequences: 336
Number of extensions: 4668
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)