Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e16
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   2.2  
SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces...    27   2.9  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.9  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    27   3.8  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   6.7  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    26   6.7  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   8.8  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   8.8  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    25   8.8  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    25   8.8  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   8.8  

>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -2

Query: 566 YFLYAVCPQGTNILFVVLRYFPGVRELKCIALAIYKGSFSYPPTIASIGNELLF 405
           YF+   C  G  +L V +  FP  R L  ++ +I  G+ ++  ++ +  N LLF
Sbjct: 162 YFIADFCYWGNILLLVYIWIFPESRRLFILSYSISYGTLAW--SVVAWRNSLLF 213


>SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
 Frame = +1

Query: 553 AYRKYDFEILCGFNYEWVKTSDNYIPENAVV-------------GGYSEVRYEPLYIGRA 693
           A+    F    G ++EW K+ D  +P   +V             G Y E RYE + +   
Sbjct: 100 AFSGIAFSAAKGLDWEWCKSPDRGLPRPDLVIFLNVDPRIAATRGQYGEERYEKIEMQEK 159

Query: 694 MVKNFLLIGK 723
           ++KNF  + K
Sbjct: 160 VLKNFQRLQK 169


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -2

Query: 200 QWNSILQYLP*FPVN*LALDIIQLVDSTSYL 108
           +WNS L++L   P   L +DI+++V+  +YL
Sbjct: 173 EWNSHLRHLLNIPKCFLGVDIVEIVNFFNYL 203


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +1

Query: 451 NEPLYIARAIHFNSLTPGKY---LRTTNKMFVPWGHTAYRKYDFEILCGFNYEWVKTSDN 621
           +E L I+    + ++ PG        TN+ FV W  T Y++         + + VKT   
Sbjct: 350 SEKLTISNVNRYLNIVPGSLDLQFSLTNENFVHWNSTVYQELLNLKSNNSSVDGVKTRRQ 409

Query: 622 YIPENAVV 645
            + ENA++
Sbjct: 410 LLEENALL 417


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 412 CYLSFLPNVVHHPQFPYHFCNVSYLGILG 326
           CY++  P+ +      Y F N S + ILG
Sbjct: 749 CYVNAFPSYIRLEDIAYPFANNSMIAILG 777


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 256 SIISRTTYNLLFKISTPSGTISGP--PIFLNSLHCK 357
           +I  RTT+  +F I+ PSG I+     +FL+ L C+
Sbjct: 242 AICQRTTWRWIFFINLPSGGIATALIVVFLHLLPCE 277


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 590  NPHNISKSYFLYAVCPQGTNILFVVL 513
            +PHN+S   FL  +C    N +F +L
Sbjct: 1319 HPHNLSMKEFLCPLCKALCNTIFPIL 1344


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 558 ICSMSPRHKHFVCCSKVFSRCQR 490
           IC  + R  HF C   V  RCQ+
Sbjct: 694 ICDPNDRFVHFECGHSVHERCQQ 716


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 436 VGGYENE-PLYIARAIHFNSLTPGKYLRTTNKMFVPW 543
           V GY+   P+Y     H+N    G +L  ++ +  P+
Sbjct: 325 VAGYQTSVPIYAKALYHYNPFQSGNFLSLSSLVIAPF 361


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 340 NSLHCKSDKEIEGGELRWVKMTNNSSLPMDAIVGGYENEPLYIARAI 480
           N  H    K + G      +  N +S P   +VG ++N+PL   R+I
Sbjct: 587 NRKHISPKKAVTGQSWFDHQYENLASSPHPLLVGVFQNQPLEYIRSI 633


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 735 KYMNFSNK*KILNHSSTY 682
           K+ NF  K  ILNHSS Y
Sbjct: 487 KFANFKLKENILNHSSIY 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,210,475
Number of Sequences: 5004
Number of extensions: 69459
Number of successful extensions: 160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)