Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e16
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81146-3|CAB03524.1|  496|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z68116-11|CAA92176.1|  317|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z68114-12|CAA92163.1|  317|Caenorhabditis elegans Hypothetical p...    29   2.7  
U40427-3|AAA81469.1|  320|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AL132876-5|CAC48119.1|  576|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z81146-3|CAB03524.1|  496|Caenorhabditis elegans Hypothetical
           protein K10D11.5 protein.
          Length = 496

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
 Frame = +1

Query: 325 PPIFLNSLHCKSDKEIEGGELRWVKMTNNSSLPMDAIVG--GYEN----EPLYIARAIHF 486
           PP+F N+ +C  +  +  G    V++T N ++P D  V   G++N    + +Y A   HF
Sbjct: 49  PPLFPNNFNCLFNIMVPVGWSAVVRLTMNMTIPSDFAVSVRGFDNYGNSDAVYTATNEHF 108

Query: 487 NSLTPG 504
             ++ G
Sbjct: 109 YFISNG 114


>AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1c protein.
          Length = 570

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +1

Query: 556 YRKYDFEILCGFNYEWVKTSDNYIPENAVVGGYSEVRYEPLYIGRAMVKNFLLIGKVHVL 735
           Y+  D E L  FN    +  D   PE          +Y+P++  R  ++NF  +   HV 
Sbjct: 8   YKAPDMEYLA-FNMAVQRLVDTGYPEEI-----KSFKYDPIFPVRGKLRNFRFVSVAHVF 61

Query: 736 YNT 744
           Y+T
Sbjct: 62  YST 64


>Z68116-11|CAA92176.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.8 protein.
          Length = 317

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 5/39 (12%)
 Frame = +2

Query: 596 MSGLKRVIIT---YQKMQSSVV--TQKSVTNHFT*VELW 697
           +S LK +++T   +Q +QSS+V  TQ  + NH   +ELW
Sbjct: 36  LSTLKAILLTNCCFQLLQSSMVFFTQIQLVNHLVPIELW 74


>Z68114-12|CAA92163.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.8 protein.
          Length = 317

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 5/39 (12%)
 Frame = +2

Query: 596 MSGLKRVIIT---YQKMQSSVV--TQKSVTNHFT*VELW 697
           +S LK +++T   +Q +QSS+V  TQ  + NH   +ELW
Sbjct: 36  LSTLKAILLTNCCFQLLQSSMVFFTQIQLVNHLVPIELW 74


>U40427-3|AAA81469.1|  320|Caenorhabditis elegans Hypothetical
           protein F43C9.1 protein.
          Length = 320

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 343 SLHCKSDKEIEGGELRWVKMTNNSSLPMDAIVGGYENE 456
           S H  S K  +    RW+  T + +LP D I+   +N+
Sbjct: 167 SFHSDSLKSAKFDHFRWISSTGSKTLPSDIILRKLQND 204


>AL132876-5|CAC48119.1|  576|Caenorhabditis elegans Hypothetical
           protein Y105E8A.5 protein.
          Length = 576

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 28/116 (24%), Positives = 54/116 (46%)
 Frame = +1

Query: 397 KMTNNSSLPMDAIVGGYENEPLYIARAIHFNSLTPGKYLRTTNKMFVPWGHTAYRKYDFE 576
           K+T +++ P+D +V G E+  +++  +  F        L T     VP    AY  YD +
Sbjct: 192 KLTKSTAEPLDILVIGTEHCEIFLIDSQAFT------ILETIKIGSVPVNICAYGTYDVD 245

Query: 577 ILCGFNYEWVKTSDNYIPENAVVGGYSEVRYEPLYIGRAMVKNFLLIGKVHVLYNT 744
                   +V+T  + I          E  Y+P+ I ++M+ + +L+ K+ ++Y T
Sbjct: 246 YRL-----FVQTRASLI----FCMKRGEADYQPIVISQSMITSMVLVNKM-IVYTT 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,568,690
Number of Sequences: 27780
Number of extensions: 385508
Number of successful extensions: 826
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)