Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e16
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    26   0.33 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    26   0.33 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   4.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.1  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   7.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.4  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 547 HTAYRKYDFEILCGFNYEWVKTSDNYIPENAV 642
           H +++  DF+   G NY +VK+ D ++P+ +V
Sbjct: 103 HLSWKPSDFD---GINYIYVKSDDIWVPDISV 131


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +1

Query: 601 WVK-TSDNYIPENAVVGGYSEVRYEPLYIGRA--MVKNFLLIGKVHVLY 738
           W+K T  N +P N V+G +  VR    Y GRA  M+   +++  V V Y
Sbjct: 343 WIKGTPQNNVP-NWVMGNHDRVRVGTRYPGRADHMIMLEMILPGVAVTY 390


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 69  TLVSDSVLSLKSPQVRRAIYQLDN 140
           TL++D+ +S+K P   R    LDN
Sbjct: 160 TLLADNSVSIKDPWFPRHASDLDN 183


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +1

Query: 352 CKSDKEIEGGEL-RWVKMTNNSSLPMDAIVGGYENEPLYIARAIHFNSLTPGKY 510
           C + K  +G EL ++++  +   L  D        +       IHF  + PGKY
Sbjct: 500 CDAMKPTKGTELLKYLRKVDFEGLSGDKFKFDKNGDGPARYNIIHFKQIEPGKY 553


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 46  NKCNKCTVYYIGV 8
           N CN+CT   IG+
Sbjct: 63  NHCNRCTSRQIGI 75


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 60  YFKTLVSDSVLSLKSPQVRRAIYQLDNI*CQLINWKSW 173
           YF T ++  + +L S + R A  Q      ++I  +SW
Sbjct: 318 YFSTTINPILYNLMSIKYRNAFKQTICCKTRIIGRRSW 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,342
Number of Sequences: 438
Number of extensions: 5177
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)