Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e12
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   0.90 
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    27   2.7  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    27   3.6  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        26   4.8  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   6.3  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.3  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    26   6.3  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   8.4  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   8.4  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    25   8.4  

>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = -3

Query: 636 KNTL*NSTFIVFNCCMTKSRLLLSRVYTISSMMRLRKCMVSHMVVNV*VKLLGWHERKLS 457
           +NTL      ++   + + +L+LSR+Y  ++   LR  +  + + N   KL  +  RK S
Sbjct: 225 QNTLSYELSGLYEKLLPRYQLVLSRIYPYAAASNLRNLLSLYRLPNCFGKLNSFDLRKGS 284

Query: 456 SVVLSINSM 430
           S  L  +SM
Sbjct: 285 STSLKRSSM 293


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +2

Query: 326 FACLMKYKDIQKYEVQQLIEWAINASPDMDLQQ--FRIEFMDKTT--ELNLRSCQPKSFT 493
           F  L +  DI  YE+   I+ AIN+S    L+    R+   D TT  E  L +  P+ F 
Sbjct: 567 FNFLERTSDISAYEIACAIKTAINSSKVKLLRSALARLSLFDSTTSREALLLAFVPEDFD 626

Query: 494 YTFTTI 511
             F T+
Sbjct: 627 SLFKTL 632


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 335 LMKYKDIQKYEVQQLIEWAINASPDMDLQQFRIEFMDKTTELNLRSCQ 478
           LM  K   +  VQ+++ +AIN S + DL+     +    T  N+R  Q
Sbjct: 495 LMNGKGNDEELVQKVLNYAINQSSNQDLRDRAFAYQRLLTPENVRKAQ 542


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +1

Query: 577 SRFCHAAVENDEGAILQRIFHTTVRHVPRSLYERQRFPHLPH 702
           +RF HA+       +L       V H  + LY    +P LPH
Sbjct: 437 NRFTHASPNRSSCVVLMDELDQLVTHNQKVLYNFFNWPSLPH 478


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/66 (22%), Positives = 34/66 (51%)
 Frame = +2

Query: 449 TTELNLRSCQPKSFTYTFTTIWDTMHFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYN 628
           TTE +++    K  T T  + ++  HFL + + + ++T ++  + F +    ++ +   N
Sbjct: 328 TTECHIQ-IPDKEATITVGSNFEVDHFLKISVGNKLWTLNRVEIPFKIISANSLSLEQEN 386

Query: 629 VFFILQ 646
           VF  L+
Sbjct: 387 VFLNLE 392


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 108  DADEPIIYFENITECLTDDQCDKFTYFAELK 16
            DAD  I+   NI   LT ++CD+F Y   +K
Sbjct: 1023 DADYAIL---NILNLLTSNECDEFDYSVLMK 1050


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 490 YLHVYHHMGHHALSQSHHRRYGVYARQKQSRFC 588
           ++H+YH+   H  + S    Y   AR   S FC
Sbjct: 34  HMHLYHYEHIHLFTSSQSYMYHPNARFSYSPFC 66


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -2

Query: 706 LNVVNEETFDVHIMIAAHGAL*YEKYVVK 620
           LN+V E+T D++I +AA  +L ++ Y+ K
Sbjct: 39  LNIVAEDTVDINIKLAA--SLYFKNYIKK 65


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -2

Query: 316 VSCLRRQQFGKVRRFRSSQKVYETKRIQQIAVFVTRKKRRQRYHGD*Q 173
           +SC ++Q +   + FR    +      Q++    +R KR+  Y+ D Q
Sbjct: 288 ISCFKKQPYNNPKFFRRKVDLINKFIGQRLMETYSRNKRKHYYNNDWQ 335


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 221 DSYLLYSFRLIDLLRASKSAHLTKLLSS--QATYLYHFACLMKYKDIQK 361
           +S+  +SF  +  L    S H+ K LSS   A  + H  CL  +  + K
Sbjct: 28  NSFFPHSFMFVKSLHLMTSQHIFKCLSSCNYALSILHNICLASFLYLSK 76


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/60 (21%), Positives = 27/60 (45%)
 Frame = +2

Query: 323 HFACLMKYKDIQKYEVQQLIEWAINASPDMDLQQFRIEFMDKTTELNLRSCQPKSFTYTF 502
           + AC   Y D +K E + +I W      +  +  FR +   + +  ++R+ + K  +  F
Sbjct: 323 NIACEPMYIDYRKDETEAIIRWKTPLHAETCINAFRTQERKQNSHDDIRAHRKKGSSRPF 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,152
Number of Sequences: 5004
Number of extensions: 63920
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)