Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e11
         (710 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.61 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   3.2  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   3.2  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   5.7  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   9.9  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   9.9  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2

Query: 475 AVLTLYDSRCQTCPATTSRCTCW 407
           ++++L + +C TC     + TCW
Sbjct: 864 SIVSLGEYKCVTCKCENGKPTCW 886


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 295 FIYKFPFTLQWKDDGVTYKYLIYVGVVRGNLIDV 396
           FI  FP T+  + +G+ Y +      +R  LID+
Sbjct: 32  FICLFPITINIRKNGLNYNFTKKCYFLRMVLIDL 65


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 140 YARRA-HSKTALSGSIIINNPAAFRILH 60
           Y+++  +SK  +SGSI +   + +RIL+
Sbjct: 227 YSKKVFYSKIIISGSIFMTTTSFYRILN 254


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 706 CVQFLGGIVVVYLF 665
           CV FLG I++ ++F
Sbjct: 235 CVFFLGSILIFFIF 248


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 4   LQSGIKRWCSCAQFFK 51
           + +G+  W SC+ FF+
Sbjct: 405 VNAGMWMWLSCSSFFQ 420


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +3

Query: 315 YVTMERRRCHLQV 353
           Y+ M+R+ CH+++
Sbjct: 173 YLPMDRQLCHIEI 185


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,577
Number of Sequences: 336
Number of extensions: 3210
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)