Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e11
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132858-16|CAB60486.2|  538|Caenorhabditis elegans Hypothetical...    32   0.47 
AL117207-25|CAB61042.2|  538|Caenorhabditis elegans Hypothetical...    32   0.47 
Z73423-2|CAA97774.1|  290|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z74039-4|CAA98500.1|   96|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AL132858-16|CAB60486.2|  538|Caenorhabditis elegans Hypothetical
           protein Y113G7A.5 protein.
          Length = 538

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 481 SVAVLTLYDSRCQTCPATTSRCTCWVWRSRQSSCRARRLRISN 353
           +++V+  +D  C  C   +S C  W   ++   CR    RISN
Sbjct: 10  TISVVAAFDDECIKCDLRSSYCKTWENSTQSCECRDGFARISN 52


>AL117207-25|CAB61042.2|  538|Caenorhabditis elegans Hypothetical
           protein Y113G7A.5 protein.
          Length = 538

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 481 SVAVLTLYDSRCQTCPATTSRCTCWVWRSRQSSCRARRLRISN 353
           +++V+  +D  C  C   +S C  W   ++   CR    RISN
Sbjct: 10  TISVVAAFDDECIKCDLRSSYCKTWENSTQSCECRDGFARISN 52


>Z73423-2|CAA97774.1|  290|Caenorhabditis elegans Hypothetical
           protein C03A3.3 protein.
          Length = 290

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 538 YMNDKQLITYDYSNYIEFFSFVRSIKKRFDNRQLQDFFYATLKKDRQQRCPP 693
           Y  D  + TY Y++  ++ + VRSI K F   Q  +  Y+  K D    C P
Sbjct: 178 YRFDDIMFTYQYTDIRQYENSVRSILK-FVKSQDVEVRYSASKNDTDNNCLP 228


>Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical
           protein F27D4.6 protein.
          Length = 1008

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 511 IVPLNKYFNYMNDKQLITYDY-SNYIEFFS 597
           I+P +KY NY+  K    +DY  N  E FS
Sbjct: 498 IIPASKYNNYLQGKYAFEFDYKENRSEVFS 527


>Z74039-4|CAA98500.1|   96|Caenorhabditis elegans Hypothetical
           protein K03B8.4 protein.
          Length = 96

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 357 QILVSDTVVFPL*RKWKLVDERAVKK 280
           QILV D +  PL +K K VD + VKK
Sbjct: 52  QILVFDQIKAPLPKKKKYVDSKQVKK 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,864,585
Number of Sequences: 27780
Number of extensions: 324672
Number of successful extensions: 855
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)