Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e11
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.7  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 358 IYVGVVRGNLIDVNAKPNTYTVKLLPGTFGNDYRIMLKP 474
           + +G+    LIDVN K    T  +      NDY++   P
Sbjct: 48  VKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDYKLKWNP 86


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 385 LIDVNAKPNTYTVKLLPGTFGNDYRIMLKPRRF 483
           LIDVN K    T  L       DY++  +P+ +
Sbjct: 65  LIDVNLKNQIMTTNLWVEQSWYDYKLRWEPKEY 97


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 385 LIDVNAKPNTYTVKLLPGTFGNDYRIMLKPRRF 483
           LIDVN K    T  L       DY++  +P+ +
Sbjct: 65  LIDVNLKNQIMTTNLWVEQSWYDYKLRWEPKEY 97


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +1

Query: 340 VTYKYLIYVGVVRGNLIDVNAKPNTYTVKLLPGTFGNDYRIMLKPRRF 483
           VT    + + +    LIDVN K    T  L       DY++   P+ +
Sbjct: 46  VTDALTVKIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWDPKEY 93


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 338 PSSFHCNVNGN 306
           P++F CNV GN
Sbjct: 324 PATFTCNVRGN 334


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +1

Query: 403 KPNTYTVKLLPGTFGNDYRIMLKPRRFNCEITRSLAIVPLNKYFNYMNDKQLITY 567
           K   Y + +         ++ML     N  ++R++ +V  N   NY N+ QL T+
Sbjct: 3   KNRNYALDVSSAASKTSSKVMLTRGTVNDIVSRNITMVLENLLMNYENN-QLPTH 56


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 277 RFFDSAFIYKFPFTLQWKDDGVTYKYLI 360
           ++F+   + +  F L + + GVTYK+ I
Sbjct: 47  KYFEQT-LNELNFNLNYVNKGVTYKHTI 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,063
Number of Sequences: 438
Number of extensions: 3967
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)