Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e08
         (723 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B53E9 Cluster: PREDICTED: similar to brefeldin ...    33   5.4  
UniRef50_Q9H9S5 Cluster: Fukutin-related protein; n=21; Euteleos...    33   5.4  
UniRef50_Q7RFK4 Cluster: Putative uncharacterized protein PY0470...    33   7.1  
UniRef50_Q2NGN9 Cluster: Partially conserved hypothetical membra...    33   9.4  

>UniRef50_UPI00015B53E9 Cluster: PREDICTED: similar to brefeldin
           A-sensitive peripheral Golgi protein, putative; n=1;
           Nasonia vitripennis|Rep: PREDICTED: similar to brefeldin
           A-sensitive peripheral Golgi protein, putative - Nasonia
           vitripennis
          Length = 721

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
 Frame = -1

Query: 504 CFLTHKCNTLNIPLK----VASSDIFSNLLFYLINCNSATSKQFHLKIRQLDRLQFKDRE 337
           C +   C+TL +PLK      ++  F+ L F+L  C S  S +   K+ ++D  + K   
Sbjct: 144 CNILCSCDTLKVPLKPDILERAATEFNQLKFHLSRCKSDLSTEQTNKMSEMDD-RLKASL 202

Query: 336 VSLQVFYIFRQHSAPIL 286
            +L V YI ++ SA ++
Sbjct: 203 SALLVAYITQKESASLI 219


>UniRef50_Q9H9S5 Cluster: Fukutin-related protein; n=21;
           Euteleostomi|Rep: Fukutin-related protein - Homo sapiens
           (Human)
          Length = 495

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 228 IPFAYVQAPAPNDAHAFLDLKLGPNAVE 311
           +PFA   A APN+   FL+LK GP  +E
Sbjct: 452 LPFAGFVAQAPNNYRRFLELKFGPGVIE 479


>UniRef50_Q7RFK4 Cluster: Putative uncharacterized protein PY04702;
           n=1; Plasmodium yoelii yoelii|Rep: Putative
           uncharacterized protein PY04702 - Plasmodium yoelii
           yoelii
          Length = 278

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 22/67 (32%), Positives = 35/67 (52%)
 Frame = -2

Query: 716 NLKKTYVNRILHF*INLDFTTIQNYHRKKYISVSISQGRN*NMKTLRYIKLMSYF*KEYE 537
           ++KK   N++L F  N++   IQN   KKYI+           KT+  + +MSY  K Y+
Sbjct: 38  HIKKNETNQLLKFNDNINNINIQNSIHKKYIADDTFCPYITKRKTI--LNIMSYDIKIYQ 95

Query: 536 MPMCFQK 516
             M ++K
Sbjct: 96  KDMLYKK 102


>UniRef50_Q2NGN9 Cluster: Partially conserved hypothetical
           membrane-spanning protein; n=1; Methanosphaera
           stadtmanae DSM 3091|Rep: Partially conserved
           hypothetical membrane-spanning protein - Methanosphaera
           stadtmanae (strain DSM 3091)
          Length = 540

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 551 KNKTLILCIVMSSCFNYVPVILKRLYIFSY-DNFVWL*NLNLFKNV 685
           KNK LIL I++SS +  + V ++ +   SY D FV+L N  LF ++
Sbjct: 8   KNKLLILLIIISSIYTAILVHIQSIIGVSYWDIFVYLQNSMLFAHI 53


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 665,909,385
Number of Sequences: 1657284
Number of extensions: 12830103
Number of successful extensions: 29978
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29970
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)