Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e08
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        23   4.4  
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    26   4.7  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    26   6.3  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    26   6.3  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 23.0 bits (47), Expect(2) = 4.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 252 PAPNDAHAFLDLKLGPNAVEKYKKLGAKLLYP*IVVDLTVLFLNG 386
           P P   H F++ + G    +  +K G  ++ P I  D  V+ + G
Sbjct: 410 PIPRRQHRFINGEKGVGIQDILRKSGCSVILPPINGDSDVVSVRG 454



 Score = 21.4 bits (43), Expect(2) = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 225 QIPFAYVQAPAP 260
           QIPFAY+   AP
Sbjct: 362 QIPFAYLDPSAP 373


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 321 KLGAKLLYP*IVVDLTVLFLNGTV*MSRYYNLLDRTVSSRKYLNW 455
           KL + ++ P +    TV+FL+G     + ++ +  T S+ K++ W
Sbjct: 4   KLNSVIINPSVAHTATVIFLHGLGDSGQGWSFMANTWSNFKHIKW 48


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -1

Query: 537 NANVLSET*HCCFLTHKCNTLNIPLKVASSDIFSNLLFYLINCNSATSKQFHL 379
           N NVLS+   C  L++  +  ++P     SD+F+ L F ++N  +     FHL
Sbjct: 104 NINVLSDI--CFPLSNNAHD-SLPTFNNGSDLFNPLYFAVLNAATPARFTFHL 153


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -1

Query: 423 YLINCNSATSKQFHLKIRQLDRLQFKD---REVSLQVFYI 313
           YLI+C  + +   H K   L  L++KD   R+ SL++ Y+
Sbjct: 345 YLISCGHSITSLKHYKELILSSLRYKDVSLRKKSLELLYM 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,723
Number of Sequences: 5004
Number of extensions: 59312
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)