Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e08
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1458 - 27270834-27271320,27271752-27271961,27272627-272736...    28   8.6  
04_01_0328 - 4330904-4333129                                           28   8.6  
04_01_0319 - 4291144-4293402                                           28   8.6  

>08_02_1458 -
           27270834-27271320,27271752-27271961,27272627-27273624,
           27274099-27274195,27274278-27274393,27274465-27274590,
           27275123-27275233,27275347-27275428,27275844-27275989,
           27276457-27276650,27277277-27277388,27277869-27278001,
           27278295-27278437,27278488-27278562,27278830-27278937,
           27279072-27279197,27279752-27279836,27280358-27280440,
           27280545-27280625,27280709-27280789,27281960-27282034,
           27282112-27282498,27282902-27283036
          Length = 1396

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 319 LYFSTAFGPNFRSRKACASLGAGAC 245
           ++ +T FGP  R +  CA LGA  C
Sbjct: 683 VFRNTMFGPEGRPQHCCAWLGAACC 707


>04_01_0328 - 4330904-4333129
          Length = 741

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 408 YNLLDRTVSSRKYLNWRLLGGYLMYCIYESENNSVTFLKAHWHFIF 545
           Y L D  +S+R  L   L     +Y +Y+S + S   + A W  +F
Sbjct: 115 YELEDNQLSARYVLELVLRVAGAVYIVYKSTHGSWALISASWLMLF 160


>04_01_0319 - 4291144-4293402
          Length = 752

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 408 YNLLDRTVSSRKYLNWRLLGGYLMYCIYESENNSVTFLKAHWHFIF 545
           Y L D  +S+R  L   L     +Y +Y+S + S   + A W  +F
Sbjct: 114 YELEDNQLSARHVLELILRVAGAVYIVYKSTSGSWALIPASWLMLF 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,076,059
Number of Sequences: 37544
Number of extensions: 318499
Number of successful extensions: 666
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)