Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e08
         (723 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC002612-1|AAH02612.1|  495|Homo sapiens fukutin related protein...    33   0.78 
AK022638-1|BAB14146.1|  495|Homo sapiens protein ( Homo sapiens ...    33   0.78 
AJ314847-1|CAC85633.1|  495|Homo sapiens fukutin-related protein...    33   0.78 
AK097556-1|BAC05100.1|  518|Homo sapiens protein ( Homo sapiens ...    31   4.2  

>BC002612-1|AAH02612.1|  495|Homo sapiens fukutin related protein
           protein.
          Length = 495

 Score = 33.5 bits (73), Expect = 0.78
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 228 IPFAYVQAPAPNDAHAFLDLKLGPNAVE 311
           +PFA   A APN+   FL+LK GP  +E
Sbjct: 452 LPFAGFVAQAPNNYRRFLELKFGPGVIE 479


>AK022638-1|BAB14146.1|  495|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12576 fis, clone NT2RM4001032. ).
          Length = 495

 Score = 33.5 bits (73), Expect = 0.78
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 228 IPFAYVQAPAPNDAHAFLDLKLGPNAVE 311
           +PFA   A APN+   FL+LK GP  +E
Sbjct: 452 LPFAGFVAQAPNNYRRFLELKFGPGVIE 479


>AJ314847-1|CAC85633.1|  495|Homo sapiens fukutin-related protein
           protein.
          Length = 495

 Score = 33.5 bits (73), Expect = 0.78
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 228 IPFAYVQAPAPNDAHAFLDLKLGPNAVE 311
           +PFA   A APN+   FL+LK GP  +E
Sbjct: 452 LPFAGFVAQAPNNYRRFLELKFGPGVIE 479


>AK097556-1|BAC05100.1|  518|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40237 fis, clone TESTI2023414. ).
          Length = 518

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 405 YYNLLDRT-VSSRKYLNWRLLGGYLMYCIYESENNSVTFLKAHWHFIFFLKIRH 563
           Y  L D+  V+   ++NW  L  +++  +YE +  +   +   W  + FL ++H
Sbjct: 86  YGELFDKVDVAQDGFINWDKLTSFILLELYEQDERAKATVVPQWKDLEFLPVKH 139


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,353,270
Number of Sequences: 237096
Number of extensions: 1890041
Number of successful extensions: 3014
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3014
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)