Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e08
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70211-3|CAA94156.1|  363|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U46673-7|AAC48154.1|  811|Caenorhabditis elegans Beta-catenin/ar...    29   4.4  
AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin syntha...    29   4.4  
AF063646-1|AAC17424.1|  811|Caenorhabditis elegans beta-catenin/...    29   4.4  
U39994-2|AAB37017.1|  378|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U10438-6|AAA19087.1|  429|Caenorhabditis elegans Hypothetical pr...    28   5.9  
L15188-9|AAM22024.1|  618|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...    28   7.8  

>Z70211-3|CAA94156.1|  363|Caenorhabditis elegans Hypothetical
           protein K11E4.3 protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 435 NLLFYLINCNSATSKQFHLKIRQLDRLQFKDRE 337
           N++FYL+N   AT K    KI  L  ++ K+ +
Sbjct: 45  NIMFYLLNLKFATKKNCKPKINNLKYMKLKEEQ 77


>Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical
           protein T25G3.2 protein.
          Length = 1322

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 524 STLAFHILFKNKTLILCIVMSSCFNYVPVILKRL 625
           + L+FH+ F    L  C+V+S+CF  V V+ + L
Sbjct: 141 AVLSFHV-FPQLDLARCLVLSACFPLVAVLQRSL 173


>U46673-7|AAC48154.1|  811|Caenorhabditis elegans
           Beta-catenin/armadillo relatedprotein 1 protein.
          Length = 811

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 208 LFKFIFRYPSPTYKHRLLTMHTL 276
           L + I  YPS  YK+ +LTMH++
Sbjct: 218 LIRHIGTYPSSIYKYAILTMHSI 240


>AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin synthase
           1 protein.
          Length = 1322

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 524 STLAFHILFKNKTLILCIVMSSCFNYVPVILKRL 625
           + L+FH+ F    L  C+V+S+CF  V V+ + L
Sbjct: 141 AVLSFHV-FPQLDLARCLVLSACFPLVAVLQRSL 173


>AF063646-1|AAC17424.1|  811|Caenorhabditis elegans
           beta-catenin/armadillo homologBAR-1 protein.
          Length = 811

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 208 LFKFIFRYPSPTYKHRLLTMHTL 276
           L + I  YPS  YK+ +LTMH++
Sbjct: 218 LIRHIGTYPSSIYKYAILTMHSI 240


>U39994-2|AAB37017.1|  378|Caenorhabditis elegans Hypothetical
           protein C48C5.1 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 566 ILCIVMSSCFN-YVPVILKRLYIFSYDNFVWL 658
           ILC ++S+ F  Y+P  L+RL  F +DN V L
Sbjct: 284 ILCAIVSAFFICYLPFQLQRLLFFYFDNEVIL 315


>U10438-6|AAA19087.1|  429|Caenorhabditis elegans Hypothetical
           protein B0280.9 protein.
          Length = 429

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -1

Query: 135 IKTTTLQQHNKITTKKQKYMSQLEEAFVNRH 43
           +K TT ++H ++ +K+  Y+ +L+EAF  RH
Sbjct: 38  LKRTTDEEHGELDSKE--YVGRLQEAFRKRH 66


>L15188-9|AAM22024.1|  618|Caenorhabditis elegans Hypothetical
           protein C14B9.2 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 387 FHLKIRQLDRLQFKDREVSLQVFYIFRQHSAPILG 283
           FH K     R   K    S  +   FR+HSAP++G
Sbjct: 333 FHSKFEPKSRTYNKAAATSEDLLAFFREHSAPLVG 367


>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 237 AYVQAPAPNDAHAF-LDLKLGPNAVEKYKKLGAKLLYP*IVVDLTVLFLNGTV 392
           AYV + A      F   ++LGPN VEK   +G    Y   ++D +V  LN  +
Sbjct: 279 AYVASDAVKGVEYFSTPVELGPNGVEKILGVGKVSAYEQKLIDASVPELNKNI 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,901,760
Number of Sequences: 27780
Number of extensions: 328368
Number of successful extensions: 768
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)