Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e08
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.3  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    23   2.9  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    23   2.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.7  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   8.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 111 HNKITTKKQKYMSQLEEAFVNRHTDLQKH 25
           H K    +QK  ++ E A + +HT  Q H
Sbjct: 644 HKKFRALRQKDSAEAEPAVIVQHTQSQLH 672


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 23  LCFCRSVCLLTKASSNCDIYFCFFV 97
           +C+ + + + TKA  N  I + FFV
Sbjct: 69  MCYMKCIMIATKAMKNDVILWDFFV 93


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 23  LCFCRSVCLLTKASSNCDIYFCFFV 97
           +C+ + + + TKA  N  I + FFV
Sbjct: 43  MCYMKCIMIATKAMKNDVILWDFFV 67


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 92  RNKNICRSW 66
           R KN CRSW
Sbjct: 396 RKKNCCRSW 404


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 92  RNKNICRSW 66
           R KN CRSW
Sbjct: 396 RKKNCCRSW 404


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = -1

Query: 498 LTHKCNTLNIPLKVASSDIFSNLLFYLINCNSATSKQFHLKIRQLDRLQFKDREVS 331
           L H  N +   L  + +D    L F   N  +      H+K+ +L   + K  E++
Sbjct: 245 LVHAVNEIEKRLLFSHNDRLGFLTFCPTNLGTTVRASVHIKLPKLAANRAKLEEIA 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,921
Number of Sequences: 438
Number of extensions: 4213
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)