Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e02
         (218 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CHH4 Cluster: Chromosome undetermined scaffold_181, w...    32   2.2  
UniRef50_Q6MED1 Cluster: Putative uncharacterized protein; n=1; ...    32   2.9  
UniRef50_P16522 Cluster: Anaphase-promoting complex subunit CDC2...    32   2.9  
UniRef50_Q4L392 Cluster: Similarity; n=1; Staphylococcus haemoly...    30   8.8  
UniRef50_P56784 Cluster: Maturase K; n=10571; Magnoliophyta|Rep:...    30   8.8  

>UniRef50_A0CHH4 Cluster: Chromosome undetermined scaffold_181,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_181,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 321

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 71  KINCVKLVSIINSRQFLFRFQEQLISQMCIHFFIYL 178
           KINC+  +SI   +QF+F F +  + Q+   F  YL
Sbjct: 188 KINCILKLSINQRKQFIFCFYKSFLVQLMADFRFYL 223


>UniRef50_Q6MED1 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Protochlamydia amoebophila UWE25|Rep:
           Putative uncharacterized protein - Protochlamydia
           amoebophila (strain UWE25)
          Length = 535

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +2

Query: 89  LVSIINSRQFLFRFQEQLISQMCIHFFIYLKFWKNKSC 202
           +++++NS  FL  F +QLI ++ I   I++ FW +  C
Sbjct: 480 ILNVLNSNIFLISFSQQLI-ELIIQLSIFIFFWISSCC 516


>UniRef50_P16522 Cluster: Anaphase-promoting complex subunit CDC23;
           n=4; Saccharomycetales|Rep: Anaphase-promoting complex
           subunit CDC23 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 626

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 62  CSYKINCVKLVSIINSRQFLFRFQEQLISQMCIHFFIYLKFWKNK 196
           C  K++   L++    + F F+F E L SQ  I F I +KF+K K
Sbjct: 258 CLQKVDDALLLNNYLYQNFQFKFSENLGSQRTIEFNIMIKFFKLK 302


>UniRef50_Q4L392 Cluster: Similarity; n=1; Staphylococcus
           haemolyticus JCSC1435|Rep: Similarity - Staphylococcus
           haemolyticus (strain JCSC1435)
          Length = 150

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 18/63 (28%), Positives = 35/63 (55%)
 Frame = +2

Query: 5   LTFTLSKTLKNSH*AHCKHCSYKINCVKLVSIINSRQFLFRFQEQLISQMCIHFFIYLKF 184
           L F   KT KN +    K+ +Y    + +   I+S  FL+  +E +I ++ I+F  +L++
Sbjct: 41  LVFYYKKTNKNKNVIR-KYTNYS-TYLSVAQGIHSAAFLYSGKENIIDRLFIYFNYHLEY 98

Query: 185 WKN 193
           ++N
Sbjct: 99  YEN 101


>UniRef50_P56784 Cluster: Maturase K; n=10571; Magnoliophyta|Rep:
           Maturase K - Arabidopsis thaliana (Mouse-ear cress)
          Length = 504

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +2

Query: 56  KHCSYKINCVKLVSIINSRQFLFRFQEQLISQMCIHFFIYLKFWKNKSCHLK 211
           ++C++K   +K  SI+N R FLF +   +     I FF+     + +S HL+
Sbjct: 187 EYCNWKNFYIKKKSILNPRFFLFLYNSHVCEYESIFFFL-----RKRSSHLR 233


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,467,980
Number of Sequences: 1657284
Number of extensions: 2303115
Number of successful extensions: 5666
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5666
length of database: 575,637,011
effective HSP length: 51
effective length of database: 491,115,527
effective search space used: 10313426067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)