Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e02
         (218 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075...    27   1.6  
08_02_0324 - 15766862-15766871,15767041-15767741                       25   6.3  

>04_04_0859 + 28805836-28805842,28806405-28806492,28807474-28807558,
            28807638-28807763,28807819-28807968,28808497-28808541,
            28808612-28808875,28809843-28809887,28810395-28810430,
            28812048-28812816,28813063-28813925,28814024-28814182,
            28814440-28814558,28815356-28815417,28816677-28816805,
            28817395-28817460,28817757-28817890,28818025-28818162,
            28818630-28818889,28818996-28819107,28819590-28819675,
            28820655-28820735,28822841-28822928,28823222-28823260,
            28823847-28823964,28824063-28824130,28824884-28824981,
            28825238-28825397,28825691-28825816,28825876-28825945,
            28826046-28826449
          Length = 1664

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 101  INSRQFLFRFQEQLISQMCIHFFIYLKFWKNKSCHLKKK 217
            + ++  L + QE  +S + +HF I    WK K+ HL ++
Sbjct: 1478 VGTKHTLAQVQENGLSDLFLHFKITGSPWKRKNKHLNQQ 1516


>08_02_0324 - 15766862-15766871,15767041-15767741
          Length = 236

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 89  LVSIINSRQFLFRFQEQLISQMCIHFFIYLKF 184
           L++I+ + Q+ +R+    +  +CIH F+Y  F
Sbjct: 96  LLNIVKACQW-YRYGALFVRSLCIHGFVYTLF 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,967,849
Number of Sequences: 37544
Number of extensions: 50989
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)