Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e02
         (218 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC018973-1|AAH18973.1|  417|Homo sapiens SIN3A protein protein.        28   4.7  
AL117513-1|CAB55972.1|  361|Homo sapiens hypothetical protein pr...    28   4.7  
AK074903-1|BAC11280.1|  573|Homo sapiens protein ( Homo sapiens ...    28   4.7  
AF418569-1|AAP97288.1| 1273|Homo sapiens MSIN3A protein.               28   4.7  

>BC018973-1|AAH18973.1|  417|Homo sapiens SIN3A protein protein.
          Length = 417

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 23  KTLKNSH*AHCKHCSYKINCVKLVSIINSRQFLFR 127
           KT++N        C +K+N  K+V +I S  +++R
Sbjct: 298 KTMENVDSLDKLECRFKLNSYKMVYVIKSEDYMYR 332


>AL117513-1|CAB55972.1|  361|Homo sapiens hypothetical protein
           protein.
          Length = 361

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 23  KTLKNSH*AHCKHCSYKINCVKLVSIINSRQFLFR 127
           KT++N        C +K+N  K+V +I S  +++R
Sbjct: 242 KTMENVDSLDKLECRFKLNSYKMVYVIKSEDYMYR 276


>AK074903-1|BAC11280.1|  573|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90422 fis, clone NT2RP3000378, weakly similar to
           PAIRED AMPHIPATHIC HELIX PROTEIN. ).
          Length = 573

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 23  KTLKNSH*AHCKHCSYKINCVKLVSIINSRQFLFR 127
           KT++N        C +K+N  K+V +I S  +++R
Sbjct: 454 KTMENVDSLDKLECRFKLNSYKMVYVIKSEDYMYR 488


>AF418569-1|AAP97288.1| 1273|Homo sapiens MSIN3A protein.
          Length = 1273

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 23   KTLKNSH*AHCKHCSYKINCVKLVSIINSRQFLFR 127
            KT++N        C +K+N  K+V +I S  +++R
Sbjct: 1154 KTMENVDSLDKLECRFKLNSYKMVYVIKSEDYMYR 1188


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,255,070
Number of Sequences: 237096
Number of extensions: 324741
Number of successful extensions: 513
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 76,859,062
effective HSP length: 51
effective length of database: 64,767,166
effective search space used: 1360110486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)