Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e02
         (218 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    20   4.0  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    20   4.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   4.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   4.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   4.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    20   4.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    19   5.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    19   5.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    19   6.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    19   9.2  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 19.8 bits (39), Expect = 4.0
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -2

Query: 136 FLESKKKLSGVDNADEFYTINFITTMFTVCLVRIF 32
           F+E ++++S         T+  I  +F VC +  F
Sbjct: 310 FIEERQRISLSKERRAARTLGVIMGVFVVCWLPFF 344


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 19.8 bits (39), Expect = 4.0
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -2

Query: 136 FLESKKKLSGVDNADEFYTINFITTMFTVCLVRIF 32
           F+E ++++S         T+  I  +F VC +  F
Sbjct: 310 FIEERQRISLSKERRAARTLGVIMGVFVVCWLPFF 344


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 4.0
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 150 CEINCSWNRKRNCLELIML 94
           C I  SW    +CL++ ++
Sbjct: 246 CPIKVSWRGNYSCLKVDLI 264


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 4.0
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 150 CEINCSWNRKRNCLELIML 94
           C I  SW    +CL++ ++
Sbjct: 297 CPIKVSWRGNYSCLKVDLI 315


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 4.0
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 150 CEINCSWNRKRNCLELIML 94
           C I  SW    +CL++ ++
Sbjct: 246 CPIKVSWRGNYSCLKVDLI 264


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 19.8 bits (39), Expect = 4.0
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -2

Query: 136 FLESKKKLSGVDNADEFYTINFITTMFTVCLVRIF 32
           F+E ++++S         T+  I  +F VC +  F
Sbjct: 310 FIEERQRISLSKERRAARTLGVIMGVFVVCWLPFF 344


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.4 bits (38), Expect = 5.3
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +3

Query: 156 VFIFSFILNFGKINRVT*KKK 218
           +F+F+ ++ F  +N +  +KK
Sbjct: 303 IFLFAAMVEFAFVNTIYRRKK 323


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic
          acetylcholine receptor alpha9subunit protein.
          Length = 431

 Score = 19.4 bits (38), Expect = 5.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 1  WVNFYSIENVKKFALSTL 54
          W N  S+EN  +F  S L
Sbjct: 15 WQNSASLENDNEFGFSYL 32


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 68  NYNVYSVLSANFLTF 24
           NY++   LSA F++F
Sbjct: 571 NYSIMIFLSAVFISF 585


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +1

Query: 109 QTVSFSIPRTINFTNVYSFF 168
           +TV + + ++ NF+ +  FF
Sbjct: 174 ETVDYMLEKSGNFSRLVVFF 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,174
Number of Sequences: 438
Number of extensions: 711
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3281070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)