Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11d23
         (675 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    30   0.015
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    24   0.99 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   1.3  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   1.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   1.3  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    24   1.3  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    23   1.7  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   9.2  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 30.3 bits (65), Expect = 0.015
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 537 PSPLASIAVIIPVHPYASS-SATRQPSNTPMSIPPQ 433
           P PLA  AV    HP+  S      PS+TP S+P Q
Sbjct: 52  PPPLADAAVGKGFHPWKKSPQGAPSPSSTPSSLPTQ 87


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 468 QPSNTPMSIPPQCSGMCPFIR 406
           +P  TP S+ P  +G+ P++R
Sbjct: 250 RPKMTPQSLLPSQTGLSPYLR 270


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = -2

Query: 491 MQAPQPQDNHQTHPCPYHRNVLECVRSLGQLPKPSLQRATGTPPSYHIDPP 339
           +Q  Q Q  +  H   Y+ NVL      G    P L    G P  + I PP
Sbjct: 55  IQQQQLQYGYHNHQ-NYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPP 104


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = -2

Query: 491 MQAPQPQDNHQTHPCPYHRNVLECVRSLGQLPKPSLQRATGTPPSYHIDPP 339
           +Q  Q Q  +  H   Y+ NVL      G    P L    G P  + I PP
Sbjct: 55  IQQQQLQYGYHNHQ-NYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPP 104


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = -2

Query: 491 MQAPQPQDNHQTHPCPYHRNVLECVRSLGQLPKPSLQRATGTPPSYHIDPP 339
           +Q  Q Q  +  H   Y+ NVL      G    P L    G P  + I PP
Sbjct: 55  IQQQQLQYGYHNHQ-NYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPP 104


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = -2

Query: 491 MQAPQPQDNHQTHPCPYHRNVLECVRSLGQLPKPSLQRATGTPPSYHIDPP 339
           +Q  Q Q  +  H   Y+ NVL      G    P L    G P  + I PP
Sbjct: 55  IQQQQLQYGYHNHQ-NYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPP 104


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 615 TNGSSISLPRYFFCCSLFPAIMTGVWPSPLASIAV 511
           T  + +SLP     C LF +    +WP P   + V
Sbjct: 43  TEATGLSLP----ACRLFCSEAAALWPKPTGEVHV 73


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 623 RQRLMVRRLVYPDISSAAPYFQQ 555
           +Q   + RL+ P    +AP+F+Q
Sbjct: 245 QQGFNMERLLAPSTEVSAPFFRQ 267


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,796
Number of Sequences: 336
Number of extensions: 3796
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)