Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11d23
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 30 0.35
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 28 1.1
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 28 1.4
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po... 27 1.9
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 27 2.5
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 27 2.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 5.7
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 25 7.6
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.9 bits (64), Expect = 0.35
Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 5/111 (4%)
Frame = -1
Query: 654 SDPAPGSVTP*AATNGSSISLPRYFFCCSLFPAIMTGVWPSP--LASIAVIIPVHP-YAS 484
+ P G +P + SS P Y + G SP + S P P Y+
Sbjct: 1528 ASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSP 1587
Query: 483 SSATRQPSNTPMS-IPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 337
+S + P++ S P S P PTS ++ T YSP SY P +
Sbjct: 1588 TSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1638
Score = 28.7 bits (61), Expect = 0.81
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 495 PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 337
P + S + PS +P S P S P PTS ++ T YSP SY P +
Sbjct: 1601 PTSPSYSATSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1652
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -1
Query: 492 YASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PATGMISS 322
Y +S + PS+ S P P PTS ++ T YSP SY P + S+
Sbjct: 1551 YGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSA 1608
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 495 PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 337
P + S + PS +P S P S P PTS ++ T YSP SY P +
Sbjct: 1615 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1666
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 495 PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 337
P + S + PS +P S P S P PTS ++ T YSP SY P +
Sbjct: 1629 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 495 PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 337
P + S + PS +P S P S P PTS ++ T YSP SY P +
Sbjct: 1643 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1694
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 495 PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 337
P + S + PS +P S P S P PTS ++ T YSP SY P +
Sbjct: 1657 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1708
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 495 PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 337
P + S + PS +P S P S P PTS ++ T YSP SY P +
Sbjct: 1671 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1722
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 495 PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 337
P + S + PS +P S P S P PTS ++ T YSP SY P +
Sbjct: 1685 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1736
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 495 PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 337
P + S + PS +P S P S P PTS ++ T YSP SY P +
Sbjct: 1699 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = -1
Query: 534 SPLASIAVIIPVHPYASSSATRQPSNTPMS----IPPQCSGMCPFIRPTSQAFFTTGHGY 367
S +S+A +P ++ SSA+ P TP+S IPP S F+ Q++ + Y
Sbjct: 241 SSSSSVAPFVPRRQFSVSSAS-DPPQTPISMSPPIPPTPSQFSAFMYQNQQSYLSPQSHY 299
Query: 366 SPVLS 352
LS
Sbjct: 300 ENPLS 304
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 506 IMTAMEASGLGQTPVIIAGNKEQQKKYLGRLIDEPLV 616
+ T + G + ++ + E+ KKY+GR + PL+
Sbjct: 252 VSTTRPETIFGDRAIAVSPHDERYKKYVGRFVKHPLI 288
>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -2
Query: 473 QDNHQTHPCPYHRNVLECVRSLGQLPKPSLQRATGTPPSYHIDPP 339
++N CP L CV S+ +LP A G P S + D P
Sbjct: 249 EENIMLTMCPLSNLKLRCVNSIAELPVREFLEA-GVPFSINCDDP 292
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 394 SLLYNGPRVLPRLIILTRHRNDFILRE 314
S + NG RVLP I RH +I+RE
Sbjct: 12 STMRNGARVLPPEAISKRHIGPYIIRE 38
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 520 GSQWTWPNSRHYCWK*GAAEEISG*TNRRTISRCL 624
G++W+W N CW G+ ISG N R L
Sbjct: 487 GTEWSWQNLNTLCWAIGS---ISGAMNEEMEKRFL 518
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 5.7
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -1
Query: 528 LASIAVIIPVHPYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTT 379
+ IIPV+P SS+ P T + P SG P T+Q TT
Sbjct: 878 IGGTTTIIPVNPGNPSSSVSAPPTTSFTPGPGGSGY-PSYSNTTQGMNTT 926
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Frame = +2
Query: 245 IPTTGFCFELTDEQKALQELARKF---------TKDEIIPVAGQYDKTGEYPWPVVK 388
IP F +++ ++++A+ L+++ + D +I + GQ + YPW VV+
Sbjct: 226 IPVYDFPYDIEEDEEAIINLSQQLRATIPFAIVSSDRLIEMNGQTVRGRAYPWGVVE 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,297
Number of Sequences: 5004
Number of extensions: 60009
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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