Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11d21
         (103 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00049-4|AAC47055.1|  332|Caenorhabditis elegans Serpentine rece...    25   9.5  
AL031254-3|CAJ76926.1|  180|Caenorhabditis elegans Hypothetical ...    25   9.5  
AL031254-2|CAB63429.2|  344|Caenorhabditis elegans Hypothetical ...    25   9.5  

>U00049-4|AAC47055.1|  332|Caenorhabditis elegans Serpentine
          receptor, class g (gamma)protein 3 protein.
          Length = 332

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 3  LW*ARCVHVRLCFLVWVTQSSGFR 74
          L+ A C++ R+ +++WV+Q   +R
Sbjct: 26 LFTAICINYRILYVIWVSQRHFYR 49


>AL031254-3|CAJ76926.1|  180|Caenorhabditis elegans Hypothetical
           protein 4R79.1b protein.
          Length = 180

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 59  ILRIS*KYSCKTKKK 103
           I++I+  YSCKTKKK
Sbjct: 92  IVKINKLYSCKTKKK 106


>AL031254-2|CAB63429.2|  344|Caenorhabditis elegans Hypothetical
           protein 4R79.1a protein.
          Length = 344

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 59  ILRIS*KYSCKTKKK 103
           I++I+  YSCKTKKK
Sbjct: 256 IVKINKLYSCKTKKK 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,899
Number of Sequences: 27780
Number of extensions: 28073
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 12,740,198
effective HSP length: 15
effective length of database: 12,323,498
effective search space used: 221822964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)