Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11d18
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0235 + 6122145-6122206,6122408-6122417,6123515-6123549,612...    30   1.5  
07_01_0770 + 5912412-5912476,5913759-5913779,5914015-5914638,591...    30   1.5  
09_04_0637 - 19153136-19153513,19153607-19153759,19153857-191546...    29   3.4  

>09_02_0235 +
           6122145-6122206,6122408-6122417,6123515-6123549,
           6124422-6124842,6124978-6125412
          Length = 320

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 563 FVRVCRATNCVFST*PTPERIEVVLAIN 646
           FV V ++TNC+    P PE I+ VLAI+
Sbjct: 219 FVPVLQSTNCLMEPLPIPEPIKEVLAIS 246


>07_01_0770 +
           5912412-5912476,5913759-5913779,5914015-5914638,
           5915264-5915439,5915526-5916124
          Length = 494

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = -3

Query: 605 TSKKRNSSRDTREQNVFGFVVSRMLLVVA*TLCITRCVPLVKPSVYFRLS 456
           +S  R  SRD R +N+FGF VS +L+ +A    + R    + P+VY  +S
Sbjct: 18  SSTTRFMSRDIRAKNIFGFSVSLILINLA--SIMERADENLLPAVYKEVS 65


>09_04_0637 -
           19153136-19153513,19153607-19153759,19153857-19154675,
           19155068-19155174,19155434-19155548
          Length = 523

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +1

Query: 361 YQEVFNLNSMMQAEQLIFHLI-YNNEEAVNVICDNLKYTEGFTSGTQRVIHSVYATTRSI 537
           YQE     S+ ++   +  +  Y++E   +V        +     T  ++ +  +  R  
Sbjct: 400 YQESMEHESIFESSSHLRQMPEYHHEHLKSVTISGFCSAKSLVELTCHIVENTTSLERLE 459

Query: 538 LDTTNPNTFCSRVSRDE 588
           LDTT+ N  CS  S DE
Sbjct: 460 LDTTHGNARCSEDSSDE 476


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,259,435
Number of Sequences: 37544
Number of extensions: 365533
Number of successful extensions: 909
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)