Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11d18
         (682 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL139287-14|CAI23184.1|  852|Homo sapiens taste receptor, type 1...    31   2.9  
AB065647-1|BAC05873.1|  936|Homo sapiens seven transmembrane hel...    31   2.9  
BC022089-1|AAH22089.1|  971|Homo sapiens DIS3 mitotic control ho...    30   6.6  
AK095407-1|BAC04542.1|  750|Homo sapiens protein ( Homo sapiens ...    30   6.6  

>AL139287-14|CAI23184.1|  852|Homo sapiens taste receptor, type 1,
           member 3 protein.
          Length = 852

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 242 FDIFKTFDEVAVADKPSVVMIRVGRTR*LVCYARVERHDGRENAAVNSHLS 90
           +D+F T  E  VA KPS++ +    +R +  Y    ++  R  A +  H S
Sbjct: 97  YDLFDTCSEPVVAMKPSLMFLAKAGSRDIAAYCNYTQYQPRVLAVIGPHSS 147


>AB065647-1|BAC05873.1|  936|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 936

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 242 FDIFKTFDEVAVADKPSVVMIRVGRTR*LVCYARVERHDGRENAAVNSHLS 90
           +D+F T  E  VA KPS++ +    +R +  Y    ++  R  A +  H S
Sbjct: 97  YDLFDTCSEPVVAMKPSLMFLAKAGSRDIAAYCNYTQYQPRVLAVIGPHSS 147


>BC022089-1|AAH22089.1|  971|Homo sapiens DIS3 mitotic control
           homolog (S. cerevisiae)-like protein.
          Length = 971

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 483 HKRHATRYTQRLRNYKKHSRHHKPEHVLFACVARRIAFFRRDQRPNASRWCWRSII*QLQ 662
           H+R   +Y  +LRN  K +RH   + +LFA   ++  +  R++  +  +W  RSI     
Sbjct: 10  HQRGRRQYN-KLRNLLKDARH---DCILFANEFQQCCYLPRERGESMEKWQTRSIYNAAV 65

Query: 663 WIF 671
           W +
Sbjct: 66  WYY 68


>AK095407-1|BAC04542.1|  750|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38088 fis, clone CTONG2020031, weakly similar to
           Mitotic control protein dis3. ).
          Length = 750

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 483 HKRHATRYTQRLRNYKKHSRHHKPEHVLFACVARRIAFFRRDQRPNASRWCWRSII*QLQ 662
           H+R   +Y  +LRN  K +RH   + +LFA   ++  +  R++  +  +W  RSI     
Sbjct: 93  HQRGRRQYN-KLRNLLKDARH---DCILFANEFQQCCYLPRERGESMEKWQTRSIYNAAV 148

Query: 663 WIF 671
           W +
Sbjct: 149 WYY 151


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,944,525
Number of Sequences: 237096
Number of extensions: 1886464
Number of successful extensions: 3767
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3761
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)