Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11d18
(682 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical pr... 29 3.1
U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical pr... 29 3.1
U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z82260-3|CAB05131.1| 346|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81493-3|CAB04036.1| 132|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein. 29 4.1
Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical pr... 28 5.4
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 28 7.1
U12966-3|AAA20614.1| 128|Caenorhabditis elegans Temporarily ass... 28 7.1
>U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical
protein T14E8.1c protein.
Length = 1018
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 171 PDAYHDDGWFICNSHLIKRFKNVKNGFAHF 260
P AYH D FI N+H + F+ + GF +F
Sbjct: 194 PTAYHADSSFIHNNHALTGFE--REGFVYF 221
>U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical
protein T14E8.1b protein.
Length = 1030
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 171 PDAYHDDGWFICNSHLIKRFKNVKNGFAHF 260
P AYH D FI N+H + F+ + GF +F
Sbjct: 194 PTAYHADSSFIHNNHALTGFE--REGFVYF 221
>U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical
protein T14E8.1a protein.
Length = 1086
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 171 PDAYHDDGWFICNSHLIKRFKNVKNGFAHF 260
P AYH D FI N+H + F+ + GF +F
Sbjct: 194 PTAYHADSSFIHNNHALTGFE--REGFVYF 221
>Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical
protein DY3.7 protein.
Length = 922
Score = 28.7 bits (61), Expect = 4.1
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +1
Query: 382 NSMMQAEQLIFHLIYNNEEAVNVICD--NLKYTEGFTSGTQRV-IHSVYATTRSILDTTN 552
N ++ + I L YN+ +AVN I + N +G QR I++ + R T +
Sbjct: 265 NDPIRTREEIVSLFYNHIKAVNEIYEGTNFNGIKGLHFVIQRTSIYTPDSCDRGRAKTDS 324
Query: 553 PNTFCSRVSRDELRFFDVTNARTH 624
N FC + D F ++ + R H
Sbjct: 325 DNPFCEE-NVDVSNFLNLNSQRNH 347
>Z82260-3|CAB05131.1| 346|Caenorhabditis elegans Hypothetical
protein C32H11.4 protein.
Length = 346
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 75 VGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYH 185
+GM P + + + +FA+ S D + SP P+ Y+
Sbjct: 146 IGMQPHVLNITQDLFAADFSSDKVALFVSPADPNDYY 182
>Z81493-3|CAB04036.1| 132|Caenorhabditis elegans Hypothetical
protein F01D5.3 protein.
Length = 132
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 96 MRVNRCIFASIVSFDACITYKSPCSPDAYHD--DGWFICNSHLIKRFKNV 239
M + I VS AC +PC D Y D D +CN+ + K F +V
Sbjct: 1 MLLQSSILLLSVSLAACQISTAPCQDDPYTDCRDYAALCNNPMYKNFLDV 50
>AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein.
Length = 922
Score = 28.7 bits (61), Expect = 4.1
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +1
Query: 382 NSMMQAEQLIFHLIYNNEEAVNVICD--NLKYTEGFTSGTQRV-IHSVYATTRSILDTTN 552
N ++ + I L YN+ +AVN I + N +G QR I++ + R T +
Sbjct: 265 NDPIRTREEIVSLFYNHIKAVNEIYEGTNFNGIKGLHFVIQRTSIYTPDSCDRGRAKTDS 324
Query: 553 PNTFCSRVSRDELRFFDVTNARTH 624
N FC + D F ++ + R H
Sbjct: 325 DNPFCEE-NVDVSNFLNLNSQRNH 347
>Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical
protein F39B2.1 protein.
Length = 564
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 498 TRYTQRLRNYKKHSRHHKPEHVLFACVARRIAFFRRDQ 611
T+ N ++H+RHH E VL AC F RRD+
Sbjct: 300 TQVADSKANLRRHARHHSGEKVL-ACPFCARFFSRRDK 336
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/68 (20%), Positives = 36/68 (52%)
Frame = +1
Query: 292 IARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVICDNLKY 471
IAR + N++ I++++ Y+ + + + +Q + +L+ ++ + +CD LK
Sbjct: 231 IAREEMKNEKNRIQKLIQEDEEGYRAMLD----EKKDQRLVYLLEQTDDYIKSLCDLLKQ 286
Query: 472 TEGFTSGT 495
+ T+G+
Sbjct: 287 QQNATAGS 294
>U12966-3|AAA20614.1| 128|Caenorhabditis elegans Temporarily
assigned gene nameprotein 174 protein.
Length = 128
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 519 RNYKKHSRHHKPEHVLFA 572
+++KKH H +PEHV +A
Sbjct: 72 KDHKKHMSHERPEHVEYA 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,923,831
Number of Sequences: 27780
Number of extensions: 331451
Number of successful extensions: 915
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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