Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11d02
         (130 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    27   0.34 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   1.8  
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    23   5.6  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    23   7.3  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    22   9.7  

>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -3

Query: 125 FLCVCVFYLSHKMDVWQKSQPILVFFSYITRFNLILKLIIT 3
           FLC+  F + H + VW    P L++ +       + K +I+
Sbjct: 711 FLCISCFIMRHHLFVWSVFSPKLLYNASWASMYFLAKCLIS 751


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
 Frame = -3

Query: 128 FFLCVCVFY-----LSHKMDVWQKSQPILV-FFSYITR 33
           FFLCVCVF      LSH + +     P+L+  FS ++R
Sbjct: 159 FFLCVCVFLSFLFSLSHLLSLAILFLPLLLRVFSTLSR 196



 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 129 FFFVCVCV 106
           FFF+CVCV
Sbjct: 158 FFFLCVCV 165


>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = -3

Query: 128 FFLCVCVFYLS--HKMDVW 78
           +FLC C +YL+  H +  W
Sbjct: 80  YFLCQCTYYLACFHFLSEW 98


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -3

Query: 65  PILVFFSYITRF 30
           P+L+ FSY+TR+
Sbjct: 332 PLLLIFSYLTRY 343


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 110 VFYLSHKMDVWQKSQPILVF 51
           VF L HKMD+ Q+    LVF
Sbjct: 117 VFCLIHKMDLVQEDLRDLVF 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 553,908
Number of Sequences: 5004
Number of extensions: 6711
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 23
effective length of database: 2,247,386
effective search space used: 42700334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)