Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11d02
         (130 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    21   4.1  
AF063021-4|AAC16248.1|   93|Anopheles gambiae unknown protein.         21   7.1  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    20   9.4  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    20   9.4  

>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 125 FLCVCVFYL 99
           FLCV VFYL
Sbjct: 248 FLCVLVFYL 256


>AF063021-4|AAC16248.1|   93|Anopheles gambiae unknown protein.
          Length = 93

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = -2

Query: 120 VCVCVLFIT*NGRLAKITTNISVFFLHYEIQLDTKINYHF 1
           +C+  L +T +    K +T++S  FL   +    ++ Y++
Sbjct: 41  LCIIALSLTLSSSSCKQSTSLSFVFLCCCVPSSERLIYYY 80


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 10  INFSIKLNLVM*EKNTNIGCDFCQTSILCDK 102
           +NF ++L+ V+ + N  +G     TSI  D+
Sbjct: 784 LNFKLQLDEVLLKANRTLGFILRFTSIFRDQ 814


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 94  IKWTSGKNHNQY*CFFLTLRDST 26
           I WT   NH    C+++  R  T
Sbjct: 93  IMWTREMNHYVIRCYYVYTRMET 115


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,344
Number of Sequences: 2352
Number of extensions: 1716
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 563,979
effective HSP length: 22
effective length of database: 512,235
effective search space used: 10244700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)