Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11d01
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo... 38 0.002
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 29 0.47
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 28 1.4
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 27 1.9
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 26 4.4
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 26 4.4
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 25 7.6
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz... 25 7.6
>SPCC338.10c |cox5||cytochrome c oxidase subunit
V|Schizosaccharomyces pombe|chr 3|||Manual
Length = 174
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/101 (25%), Positives = 45/101 (44%)
Frame = +3
Query: 303 IKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWKGVVGWALVLSSLAAWIY 482
I L ++K W L++EEKK Y +F + + + V W V +
Sbjct: 55 ITDLYARQKQPWTTLSIEEKKAAYWIAFGEHGPRAFSHISQ--KTVFWGTVAGLTIGVVL 112
Query: 483 MAMKVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLASK 605
+ +P P +++ E Q+ + M + K+NPI G AS+
Sbjct: 113 FGLIRTQAAPSPRTMTREWQEKSNEYMKENKINPISGEASE 153
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 29.5 bits (63), Expect = 0.47
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 76 SSPILPAKWPII*CAGRSSMLSVFLSAPGLDPLETLNLPRLV 201
S+ +LP+ PI+ GRSS LSV D TLN P +
Sbjct: 431 SATVLPSSTPILLPRGRSSTLSVNKKQFNADDGSTLNSPNSI 472
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 270 PAIRFREDTPDIKALREKEKGDWRKLTLEEK 362
P FR + + K RE++K +W+K E+K
Sbjct: 110 PPAWFRREMGEWKKAREEDKAEWKKAREEDK 140
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 288 EDTPDIKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWK 431
ED + K RE++K +W+K E+K +A + E++ EW+
Sbjct: 149 EDKAEWKKAREEDKAEWKKAREEDKAEWKKAR--EEDKEWRNSMDEWR 194
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 288 EDTPDIKALREKEKGDWRKLTLEEK 362
ED + K RE++K +W+K E+K
Sbjct: 127 EDKAEWKKAREEDKAEWKKAREEDK 151
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 288 EDTPDIKALREKEKGDWRKLTLEEK 362
ED + K RE++K +W+K E+K
Sbjct: 138 EDKAEWKKAREEDKAEWKKAREEDK 162
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 656 LASAVSNLLPAVV-FVVPLGSKSIDGVHLKVQHSLELSL 543
LA V ++L V +VP G+K I +HLK S+ + L
Sbjct: 213 LAENVESILQFVSKHIVPDGAKGIASIHLKTSQSIAIPL 251
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 264 GSQACLRSWAGR*NHSLPTHGHQSWQVQCFQW 169
GSQ C +W+ N + THG QV +++
Sbjct: 335 GSQVCNMAWSKTSNEIVTTHGFAKNQVSLWKY 366
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +3
Query: 303 IKALREKEKGDWRK---LTLEEKKTLYR 377
I+ALREK K K L LEEKKT Y+
Sbjct: 49 IEALREKAKEKKEKERILALEEKKTNYK 76
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 426 WKGVVGWALVLSSLAAWIYMAMKVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLAS 602
WK + G L +S + I + VY P+ D + Q A L+R+ + + +AS
Sbjct: 79 WKQLEGETLEISRYHSQIIGQIASQVYKPLIDYYTSSPQTATLRRLAERLSTVAEEMAS 137
>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 513 IPDSLSEERQKAQLQRMLDLKVNPIDGLASKWDYEN 620
+P + ERQ ++ +L+ +P+DG ++ DY N
Sbjct: 27 LPKIVLSERQFCDVELILNGGFSPLDGFMNQKDYLN 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,428
Number of Sequences: 5004
Number of extensions: 66194
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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