Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11c16
         (120 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025463-4|AAB71010.2|  344|Caenorhabditis elegans Serpentine re...    25   5.6  
U97551-2|AAP13776.1|  434|Caenorhabditis elegans Nuclear hormone...    25   9.9  
U97551-1|AAP13775.1|  435|Caenorhabditis elegans Nuclear hormone...    25   9.9  
AF083229-1|AAD03687.1|  288|Caenorhabditis elegans nuclear recep...    25   9.9  

>AF025463-4|AAB71010.2|  344|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 3 protein.
          Length = 344

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 102 CGTLHDFACHPCAGAMLIFSVSFQF*Y 22
           C  LH F CH  A +  I  +SF + Y
Sbjct: 100 CYFLHVFVCHCLAHSQWILMISFLYRY 126


>U97551-2|AAP13776.1|  434|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 14, isoform b protein.
          Length = 434

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 9   FGSTYTKIGTIQRRLAWP 62
           F S +T +GT+QR +A P
Sbjct: 198 FSSAFTLLGTLQRSMALP 215


>U97551-1|AAP13775.1|  435|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 14, isoform a protein.
          Length = 435

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 9   FGSTYTKIGTIQRRLAWP 62
           F S +T +GT+QR +A P
Sbjct: 198 FSSAFTLLGTLQRSMALP 215


>AF083229-1|AAD03687.1|  288|Caenorhabditis elegans nuclear receptor
           NHR-14 protein.
          Length = 288

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 9   FGSTYTKIGTIQRRLAWP 62
           F S +T +GT+QR +A P
Sbjct: 51  FSSAFTLLGTLQRSMALP 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,657
Number of Sequences: 27780
Number of extensions: 33352
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 12,740,198
effective HSP length: 20
effective length of database: 12,184,598
effective search space used: 231507362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)