Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11c16
         (120 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   5.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   7.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             19   7.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    18   9.7  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 116 FFNKNVERFTILRVILAQGPC*SSLYRS 33
           FFN  + R T+   +    PC S  Y S
Sbjct: 226 FFNITLRRKTLFYTVNLIVPCVSISYLS 253


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 55  ANLLCIVP 32
           ANL CIVP
Sbjct: 601 ANLQCIVP 608


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = -3

Query: 118  FFLIKMWNASRFCVSSLRRGHANLLCIVP 32
            F     WN   F  S    G  N+  I+P
Sbjct: 1158 FTPFNFWNPPPFMPSPFMAGAPNVPTILP 1186


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -2

Query: 113 FNKNVERF 90
           +N+N+ERF
Sbjct: 547 YNENIERF 554


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,237
Number of Sequences: 438
Number of extensions: 334
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 20
effective length of database: 137,583
effective search space used:  2614077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)