Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11c06
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    30   0.39 
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    29   0.68 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    28   1.6  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.8  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    27   3.6  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   4.8  

>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -2

Query: 639 LTTMPEPIIRPNVTIMDIHPFLATKFRSAGVLKTATALPAVSTKEPAMYPYVVFIRSF 466
           +TT   PII+    +  +H  ++  F   G LKT   +     K PA+ P V+ I+ F
Sbjct: 336 ITTANVPIIKFVDPLTKVHVDIS--FNQPGGLKTCLVVNGFMKKYPALRPLVIIIKHF 391


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +2

Query: 434 LQESHLW---PQYVKERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARNGWMSIIVT 604
           L+   LW   P  +K+++K+      GS    AG + A          +A N W  ++VT
Sbjct: 74  LEYQQLWQSLPVEIKQQVKSLALQTLGSSEHQAGQSAAQLVAAIAAYELATNQWPDLMVT 133

Query: 605 LGLMIGSG 628
           L   +G G
Sbjct: 134 LVANVGEG 141


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = +2

Query: 413 SGVKPGTLQESHLWPQYVKERIKT-TYGY---IAGSLVLTAGSAVAVFRTPALLNLVARN 580
           SG  PGT+      P ++ E + + + G+   IA  +  TAG+ +    TP+ +     +
Sbjct: 667 SGSVPGTVLVDVPTPSWITETVTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWVTETVTS 726

Query: 581 GWMSIIVTLGLMIGS 625
           G +    T+   IGS
Sbjct: 727 GSIGFTTTIATPIGS 741


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 627 PEPIIRPNVTIMDIHPFLATKFRSAGVLKTATALPAVSTKEPAMYPYV 484
           P+P   PNVT++   P  A + +   +  T + +P   T + +  P+V
Sbjct: 115 PQPQSHPNVTVISASPARAIEQQPTILSSTDSNIPRPGTVKSSASPFV 162


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +3

Query: 219 HKILYRET--MWSEIMHENLEQGSLHA 293
           H I++RET  +WSE+M     Q S++A
Sbjct: 78  HVIVWRETGGVWSELMDHTAHQASVNA 104


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 189 LNAERPIHIRDNIINSENVYVYFNRI 112
           +N  R +H+  N++  EN YV+ N I
Sbjct: 557 INPVRVLHVLINLLRDENSYVHLNVI 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,201,334
Number of Sequences: 5004
Number of extensions: 70500
Number of successful extensions: 202
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)