Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11c06
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    25   0.56 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.0  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 214 STTKFCTEKLCGQKLCTRTSNKGRYTLTTHTSGETHGTC 330
           S  K  T +LCG+ LC++ S K R+    H   +    C
Sbjct: 1   SAKKLFTCQLCGKVLCSKASLK-RHVADKHAERQEEYRC 38


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 628 HGSKRNGVHTW 660
           HG KR+G H+W
Sbjct: 697 HGIKRSGSHSW 707


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +3

Query: 213 QYHKILYRETMWSEIMHENLEQGSLHAHNPHFGRDSWHLLDQMHS 347
           Q+H    +E +W+ +    +  G      P F  + W L++Q  S
Sbjct: 799 QFHN---KELLWTSVKKALMIVGIRPERLPSFDDECWRLMEQCWS 840


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +3

Query: 213 QYHKILYRETMWSEIMHENLEQGSLHAHNPHFGRDSWHLLDQMHS 347
           Q+H    +E +W+ +    +  G      P F  + W L++Q  S
Sbjct: 837 QFHN---KELLWTSVKKALMIVGIRPERLPSFDDECWRLMEQCWS 878


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/16 (37%), Positives = 14/16 (87%)
 Frame = +2

Query: 587 MSIIVTLGLMIGSGMV 634
           +++++TLG+ I SG++
Sbjct: 403 LALVITLGIAIVSGLI 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,267
Number of Sequences: 438
Number of extensions: 5440
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)