Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11c05
         (746 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   1.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   1.5  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   3.4  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    23   3.4  
AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochr...    22   6.0  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +2

Query: 182 VIGSAGTGKSSLLN 223
           ++GS+G GK++LLN
Sbjct: 109 ILGSSGAGKTTLLN 122


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +2

Query: 182 VIGSAGTGKSSLLN 223
           ++GS+G GK++LLN
Sbjct: 109 ILGSSGAGKTTLLN 122


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 169 KIFVRFRHICYL*VKLSLVGFKYTIFGFYYFVKIKTLYDCNLLMIAL 29
           ++F+ F  ICYL   LS       +F   + V +  L+  + L I L
Sbjct: 218 RVFISFSKICYLHQHLSK---SVKLFNEVFGVSLLVLFGNSFLSIVL 261


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 169 KIFVRFRHICYL*VKLSLVGFKYTIFGFYYFVKIKTLYDCNLLMIAL 29
           ++F+ F  ICYL   LS       +F   + V +  L+  + L I L
Sbjct: 236 RVFISFSKICYLHQHLSK---SVKLFNEVFGVSLLVLFGNSFLSIVL 279


>AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q2 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 197 LHFQSQEI*KDIRTIQTYLLP 135
           +H  S+ + +D+RT + YL+P
Sbjct: 62  VHLISRALGEDVRTQKGYLIP 82


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,036
Number of Sequences: 336
Number of extensions: 3349
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)