Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11c04
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    26   0.33 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   1.8  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   3.1  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   7.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.1  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   7.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   9.3  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +2

Query: 404 TKFTVLKACYEETGHSVPNSLLHTI-ETVDDLTEFYKTPVYTTTPFDALKLMDLPKNLHV 580
           TK+ +LKA ++  G S  N ++  + + V+++T+    P  T  P  A    DL   L  
Sbjct: 370 TKYPILKAIHQTLGGS-SNEIVEPVPQPVEEVTQ---KPSSTKAP--APPSRDLTTTLCT 423

Query: 581 QKDYVRFHPDTDTLF 625
           +  YVR  PD  ++F
Sbjct: 424 KAGYVR-DPDDCSIF 437


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 333 MFVGGSHDLVGRRKPLAAKDSAAA*TFLSALGYFF 229
           +F+GG+   + RR   A++   AA     ALG F+
Sbjct: 166 VFIGGTTGKLRRRSTAASRSRLAAFKRTIALGAFY 200


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +3

Query: 396 HWTQNLQFSKLVMKKQAIVCLIHFCIRLKQLMT*QNFTK 512
           H  +N ++ K+++     +CL    I +++     NFTK
Sbjct: 15  HSMKNFKYLKVLVTFAHFICLFPITINIRKNGLNYNFTK 53


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 593 HNLFEHVDFWVDPLTSEHQTV*LCTQVFCKILLG 492
           + L EHV  W  PLT       L  +V  ++ LG
Sbjct: 410 NELPEHVIMWSSPLTESPYFEKLDVKVTVQLWLG 443


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 20  PPTSLWI*QLQKSKYRLW 73
           P    WI  ++K  Y+LW
Sbjct: 132 PEVGTWIRAVRKCLYKLW 149



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 607  RYGHFIQWRLRFSEEFDYCNRP 672
            R+G F Q   +   +FD C++P
Sbjct: 1306 RFGTFSQIITKTQLDFDLCSKP 1327


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 20  PPTSLWI*QLQKSKYRLW 73
           P    WI  ++K  Y+LW
Sbjct: 132 PEVGTWIRAVRKCLYKLW 149



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 607  RYGHFIQWRLRFSEEFDYCNRP 672
            R+G F Q   +   +FD C++P
Sbjct: 1306 RFGTFSQIITKTQLDFDLCSKP 1327


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 566 KNLHVQKDYVRFHP 607
           KNL V K +V F P
Sbjct: 281 KNLDVMKSFVNFRP 294


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 620 KCPYLDEI*HNLFEHV 573
           KCP++ E  H+L  H+
Sbjct: 235 KCPFITEYKHHLEYHL 250


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,652
Number of Sequences: 336
Number of extensions: 4082
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)