Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11c04
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 27 1.9
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 27 1.9
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 27 1.9
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 27 1.9
SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 3.3
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy... 26 5.8
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo... 26 5.8
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 5.8
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 26 5.8
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 390 LKHWTQN-LQFSKLVMKKQAIVCLIHFCIRLKQLM 491
L +W L FSK++ Q ++CL F L Q +
Sbjct: 111 LSYWIWTCLHFSKIIFPAQKVICLYIFLFALNQTL 145
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 390 LKHWTQN-LQFSKLVMKKQAIVCLIHFCIRLKQLM 491
L +W L FSK++ Q ++CL F L Q +
Sbjct: 111 LSYWIWTCLHFSKIIFPAQKVICLYIFLFALNQTL 145
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 390 LKHWTQN-LQFSKLVMKKQAIVCLIHFCIRLKQLM 491
L +W L FSK++ Q ++CL F L Q +
Sbjct: 83 LSYWIWTCLHFSKIIFPAQKVICLYIFLFALNQTL 117
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 390 LKHWTQN-LQFSKLVMKKQAIVCLIHFCIRLKQLM 491
L +W L FSK++ Q ++CL F L Q +
Sbjct: 111 LSYWIWTCLHFSKIIFPAQKVICLYIFLFALNQTL 145
>SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 199
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 401 DTKFTVLKACYEETGHSVPNSLLHTIETVDDLTEFY 508
+ + +K Y++TG V ++ L I DDL +Y
Sbjct: 112 EARLQAVKLAYQKTGRIVYDAPLQNIHNWDDLYNYY 147
>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 375
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -2
Query: 575 VDFWVDPLTSEHQTV*LCTQVFCKILLGHQLFQSY 471
+DFW +PL EH V + Q ++ H + +
Sbjct: 266 LDFWNEPLYKEHNGVFVEQQALSHMIYSHPIVHKH 300
>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +2
Query: 179 LPLRRGSFQVTSIRQAQKKYPKADKKVQAAAESLAARGFLRPTKSWDPPTNINETIL--K 352
LP+ ++ ++ Q KKYPKA+ +++ L S+ P N+ +T++
Sbjct: 146 LPIPAVWSKMPAVLQTMKKYPKAEWIWLLDQDAIITNTHLSLQDSFLKPENLQKTLITNT 205
Query: 353 ICATCGLNGNSEFEALDTKFTV 418
I +N N + + +++
Sbjct: 206 ILTKRPINANGDLRYTPSNYSL 227
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 425 ACYEETGHSVPNSLL--HTIETVDDLTEFYKTPVYTTTP 535
ACY + + + L +T+ T T F TP TTTP
Sbjct: 913 ACYNPSQYVCSDGSLSPNTVTTTKATTTFTPTPTTTTTP 951
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = +2
Query: 350 KICATCGLNGNSEFEALDTKFTVLKACYEETGHSVPNSLLHTIETVDDLTEFYK-----T 514
+ C C S F L +KF + + YE + +SLL+ T+ ++ E +
Sbjct: 212 EFCQICEREIQSWFFELHSKFCLSTSTYESVVQAAQDSLLYFRSTLLEIQEGMQKDSSLV 271
Query: 515 PVYTTTP 535
PVY P
Sbjct: 272 PVYKNEP 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,040
Number of Sequences: 5004
Number of extensions: 63704
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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