Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11c04
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68318-1|CAA92691.1|  285|Caenorhabditis elegans Hypothetical pr...    71   8e-13
U23519-12|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical p...    32   0.44 
Z92832-6|CAB07375.2|  572|Caenorhabditis elegans Hypothetical pr...    31   0.58 
AC024880-2|AAF60914.4|  665|Caenorhabditis elegans Hypothetical ...    29   3.1  
AC024880-1|AAR12985.1|  634|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z35663-14|CAA84733.1|  805|Caenorhabditis elegans Hypothetical p...    28   5.4  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AL031632-1|CAA21004.1|  248|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z79605-8|CAE18060.2|  340|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z78537-2|CAB01720.2|  604|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z73973-1|CAA98266.1|  357|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U80843-6|AAB37971.1|  345|Caenorhabditis elegans Skn-1 dependent...    27   9.4  
AL034489-11|CAL49453.1|  340|Caenorhabditis elegans Hypothetical...    27   9.4  

>Z68318-1|CAA92691.1|  285|Caenorhabditis elegans Hypothetical
           protein T21B10.1 protein.
          Length = 285

 Score = 70.9 bits (166), Expect = 8e-13
 Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 14/187 (7%)
 Frame = +2

Query: 158 EMFRNVLLPLR-RGSFQVTSIRQAQKKYPKADKKVQAA-AESLAARGFLRPTKSWDPPTN 331
           E  R  L  +R R S QVT+   +  ++      +     +++ ARGFL+ T+++ P  +
Sbjct: 38  ESLRKTLPSIRARESTQVTASADSVTEFDDDLLTMSRIDTDAIRARGFLKYTQNYVPGVD 97

Query: 332 INETILKICATCGLNGNSEFEALD----------TKFTVLKACYEETGHSVPNSLLHTIE 481
           +   +L+  ++C  +   + E +D           KF +L    +   H   N  L  +E
Sbjct: 98  VKNQVLEAASSCLRSAGVKSENVDQYKFVEGDNSVKFELLNRLGKSIEHWPTNGKLLHLE 157

Query: 482 TVDDLTEFYKTPVYTTTPF-DALKLMDLPKNLHVQKDYVRFHP-DTDTLFNGVSAFPKSS 655
           TV D+ EFY+TPV   T + +  +  + PKN+ + +   RFHP DT     G++AFP S 
Sbjct: 158 TVADVVEFYQTPVKNVTKYTEMARDENKPKNVSIMEHAARFHPEDTHMYHGGITAFPGSG 217

Query: 656 TIVTGLK 676
             V  L+
Sbjct: 218 GEVLSLR 224


>U23519-12|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical
           protein F26G1.1 protein.
          Length = 1021

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +2

Query: 353 ICATCGLNGNSEFEALDTKFTVLKACYEETGHSVPNSLLHTIETVDDLTEF 505
           +C++  L     F  LD    ++  C E+ G    NSL+H IET+ + T+F
Sbjct: 715 VCSSLSLIDFQAFTNLDQCIELIVRCREDMGLR-QNSLIHIIETLFNFTQF 764


>Z92832-6|CAB07375.2|  572|Caenorhabditis elegans Hypothetical
           protein F31D4.7 protein.
          Length = 572

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 302 PTKSWDPPTNI--NETILKICATCGLNGNSEFEALDT 406
           PTKS D  TN+   ET L++C   G N N EF   ++
Sbjct: 513 PTKSPDEVTNLVEYETALRVCEQIGDNNNEEFSEAES 549


>AC024880-2|AAF60914.4|  665|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.2a protein.
          Length = 665

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +2

Query: 485 VDDLTEFYKTPVYTTT---PFDALKLMDLPKNLHVQKDYVRFHPDTDTLFNGVSAFPKSS 655
           V++  E  K+P  +T+   P  A  + D PK  +V ++Y R   D  T+ +    F K +
Sbjct: 259 VEEYEETTKSPTVSTSTSEPMAAAPITDAPKTENVSRNYTRIIWDRRTVRSSSEKFSKFA 318

Query: 656 TI 661
            I
Sbjct: 319 II 320


>AC024880-1|AAR12985.1|  634|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.2b protein.
          Length = 634

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +2

Query: 485 VDDLTEFYKTPVYTTT---PFDALKLMDLPKNLHVQKDYVRFHPDTDTLFNGVSAFPKSS 655
           V++  E  K+P  +T+   P  A  + D PK  +V ++Y R   D  T+ +    F K +
Sbjct: 209 VEEYEETTKSPTVSTSTSEPMAAAPITDAPKTENVSRNYTRIIWDRRTVRSSSEKFSKFA 268

Query: 656 TI 661
            I
Sbjct: 269 II 270


>Z35663-14|CAA84733.1|  805|Caenorhabditis elegans Hypothetical
           protein T04A8.16 protein.
          Length = 805

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
 Frame = +2

Query: 134 LVDTKKN*EMFR-NVLLPLRRGSFQVTSIRQAQKKYPKADKKVQAAAESLAARG--FLRP 304
           LV  KK   +FR NV+  + R  F  ++I+  Q++YP     +    E L  +   F   
Sbjct: 42  LVQEKKCLPIFRKNVMECINRAEFLKSNIQNLQQQYPPTTDDIAHNVEYLMVKAAVFQNY 101

Query: 305 TKSWDPPTNINETILKICATCGLNGNSEFEAL 400
               D    + E +++ C     N     E L
Sbjct: 102 ENQVDEARQVYENVVEQCLGASRNRTLPQETL 133


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 50  QKSKYRLWLCCSRKITLLKNYIKI 121
           +K  Y+ W+C S K+ + +NY++I
Sbjct: 329 EKLHYQFWMCGSHKMIMDENYVQI 352


>AL031632-1|CAA21004.1|  248|Caenorhabditis elegans Hypothetical
           protein Y32B12B.1 protein.
          Length = 248

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 274 FCRCLNLFICFGIFFLSLSDRCDLETSTT 188
           FCRCL ++ C  +F + L    +LETS T
Sbjct: 14  FCRCLCVYRCLWLFLIMLK---NLETSKT 39


>Z79605-8|CAE18060.2|  340|Caenorhabditis elegans Hypothetical
           protein ZK678.8 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +2

Query: 215 IRQAQKKYPKADKKVQAAAESLAARGFLRPTKSWDPPTNINETILKICATCGLNGNSEFE 394
           IR    +YPK    +++   SL  R F+R  ++W       ET++ +   C  + N   +
Sbjct: 101 IRPDLPEYPKRILVIRSGPGSLDYRNFIR--RTWKQQV---ETLVPVVFVCATSKNDTLK 155

Query: 395 ALDTKF-TVLKACYEETGHSV 454
               K+  +L+  +E++ H++
Sbjct: 156 IEANKYRDILQFDFEDSYHNL 176


>Z78537-2|CAB01720.2|  604|Caenorhabditis elegans Hypothetical
           protein C09F12.2 protein.
          Length = 604

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = -2

Query: 146 WYLLVSFVIFLYNS*AM----LSFVNSITITYIYFFEVVKSTGWLVAILH 9
           W LL +F+IFL+ + A+    +  VN   +  +    ++    W++AI++
Sbjct: 93  WNLLFTFLIFLFITSAIWIPCIPAVNDFALEIVTIISIILHCLWIIAIIN 142


>Z73973-1|CAA98266.1|  357|Caenorhabditis elegans Hypothetical
           protein F25D1.2 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = -2

Query: 560 DPLTSEHQTV*LCTQVFCKILLGHQLFQSYAKVN*AHYGLFLHNKL*EL*ILCPMLQIL 384
           +P+ S H  + +   +   + +G  L Q+Y+ +   +YG+  H+ L    +  P+LQ++
Sbjct: 186 EPVKSSHPALFVFLLMVINVSIGVPLMQTYSALIFTYYGMTTHSAL-LFSVFYPILQLI 243


>U80843-6|AAB37971.1|  345|Caenorhabditis elegans Skn-1 dependent
           zygotic transcriptprotein 4 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 401 DTKFTVLKACYEETGHSVPNSLLHTIETVDDL 496
           D   T+ K  Y+ T H+  N  LH I+  D+L
Sbjct: 52  DHSITINKDTYQFTVHNTKNGFLHDIDERDEL 83


>AL034489-11|CAL49453.1|  340|Caenorhabditis elegans Hypothetical
           protein ZK678.8 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +2

Query: 215 IRQAQKKYPKADKKVQAAAESLAARGFLRPTKSWDPPTNINETILKICATCGLNGNSEFE 394
           IR    +YPK    +++   SL  R F+R  ++W       ET++ +   C  + N   +
Sbjct: 101 IRPDLPEYPKRILVIRSGPGSLDYRNFIR--RTWKQQV---ETLVPVVFVCATSKNDTLK 155

Query: 395 ALDTKF-TVLKACYEETGHSV 454
               K+  +L+  +E++ H++
Sbjct: 156 IEANKYRDILQFDFEDSYHNL 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,448,388
Number of Sequences: 27780
Number of extensions: 359172
Number of successful extensions: 943
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)