Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11c04
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.6  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   4.7  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.2  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 222 CLIDVTWKLP 193
           CL+DV W++P
Sbjct: 288 CLLDVQWRIP 297


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 160 NVQECIITLTSWKFPG 207
           +VQ C++ L SW + G
Sbjct: 163 DVQTCVLKLGSWTYDG 178


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 116 LYNS*AMLSFVNSITITYIYFFEVVKSTGW 27
           + NS  ++ F+ S+TIT +       S GW
Sbjct: 1   MVNSQILILFILSLTITIVMCQTFTYSHGW 30


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 175 YIPEHFLIFFGIY*SVLLYFYIILKQCYLS 86
           YIPE  L+ F  Y SV+    +  +  YLS
Sbjct: 302 YIPESDLVTFLCYPSVMNLDDLTRRSLYLS 331


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 175 YIPEHFLIFFGIY*SVLLYFYIILKQCYLS 86
           YIPE  L+ F  Y SV+    +  +  YLS
Sbjct: 302 YIPESDLVTFLCYPSVMNLDDLTRRSLYLS 331


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 210  HLSDKLKKNIPKQIKRFKQRQNP*RQ 287
            H S K ++  P+Q ++ +Q+Q P +Q
Sbjct: 1495 HSSQKTQQQQPQQQQQQQQQQQPQQQ 1520


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,540
Number of Sequences: 438
Number of extensions: 4139
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)