Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11c03
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.80 
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   3.2  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   4.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   5.6  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.8  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   9.8  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    25   9.8  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
 Frame = +2

Query: 197 AVKSISVDTVTATKLST--GWTRTK*EASTLTLIQSSRCTSRSKPPATDI*CSLKSLILA 370
           +  S +  + ++T LS+    T T   ++ L+ + S+  TS S  P T +  +  +   +
Sbjct: 427 SANSTTATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTTATSASS 486

Query: 371 SVIQFTKLWSAVEGTSSPNYAATCDAMPRAPSPHPKY 481
           + +      SA   +S+P  +A         S  P Y
Sbjct: 487 TPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSY 523



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/92 (20%), Positives = 37/92 (40%)
 Frame = +2

Query: 206 SISVDTVTATKLSTGWTRTK*EASTLTLIQSSRCTSRSKPPATDI*CSLKSLILASVIQF 385
           S S   +++   +   T T   ++ L+ + S+  TS S  P T +  +  +   ++ +  
Sbjct: 318 SASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTS 377

Query: 386 TKLWSAVEGTSSPNYAATCDAMPRAPSPHPKY 481
               SA   +S+P  +A         S  P Y
Sbjct: 378 VNSTSATSASSTPLTSANSTTSTSVSSTAPSY 409


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 356 SLILASVIQFTKLWSAVEGTSSPNYAATC-DAMPRAPSP 469
           S+ L   I F  L SAV G+ S +Y  TC + +PRA  P
Sbjct: 7   SVFLFLHIVFYSLLSAVNGSPSLDYFETCSNFVPRAGIP 45


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 589 DPLSVKYFSFAAWNGVEAKFL 651
           DPL +K F F  W+  E  FL
Sbjct: 686 DPLDIKMFKFTHWSYSEENFL 706


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 298  RLNEGQR*CFSFR-SRPPGRKFRSCNRVYRYALYSASHLCN 179
            +L EGQ     +   R   RKF+ C  + RYA ++A  + N
Sbjct: 1016 QLFEGQMDVLEYELDRMASRKFKMCVSMQRYAKFTADEIEN 1056


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -2

Query: 554 PSLPNSTRPSSDILM*KPLSSIGDNIWGVVTE 459
           PS P STRPSS      PLS   ++I  V  E
Sbjct: 284 PSPPQSTRPSSTRFPSVPLSDEKNSIVSVKNE 315


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 427 LRRNLRRNAKSSVTTPQILSPIELRG---FYIKISEDGLVEFGREGQVLPLI 573
           +  N+  N   +     I SP+   G   F+ K++  GL+++ +   +LPLI
Sbjct: 359 MTENMFLNPIENTVNISITSPLVWHGAILFFAKLAGAGLIKYSKCLHILPLI 410


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +1

Query: 130 WLLACVCTVRTDNFTYSYKDAMRCKEHICRHGYSYETFYRVDANEMRSINVDPHSVFEM 306
           W   CVCT+ T  F   +K   R K  I R  Y + T+      E+    + P+   E+
Sbjct: 16  WFFCCVCTILTMPF---FKKPYR-KRGISRTPYEWLTYADKCVIELSKSELKPNEEKEL 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,474
Number of Sequences: 5004
Number of extensions: 56943
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)