Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11c03
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.6  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +1

Query: 142 CVCTVRTDNFTYSYKDAMRCKEHICRHGYSYETFYRVDANEMRSINV-DPHSVFEMHIAI 318
           C C+    + T +   ++R    IC      + F   DAN   S N+ +  S  E ++  
Sbjct: 331 CRCSPSNPSITRTGLSSVRDSSIICGGNKRSQVFRGRDANRQNSCNIYNASSRMENNLRG 390

Query: 319 QAASN 333
           +  SN
Sbjct: 391 ETQSN 395


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 442 AGCGVVR*TCSLHRRP 395
           AGC VV  T  LHR+P
Sbjct: 436 AGCTVVIGTFKLHRQP 451


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 142 TRVTRLRTQSVSFYQLITFNKKEI*TIFYLLKKRNKSTRFRTANT 8
           T V+ L+  S + + L+  +   +  + YLL + +   RF+ ANT
Sbjct: 556 TLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRFKLANT 600


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +1

Query: 415 KFTELRRNLRRNAKSSVTTPQILSPIELRGFYIKISEDGLVEFGREGQVLPLIS 576
           + T++RR+   +   S +    +      G  + + E+G VE  R+G+ L  ++
Sbjct: 107 ELTQIRRDRGLHVSCSFSAGSTIIREGDVGSIVYVMEEGKVEVSRDGKYLSTLA 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,540
Number of Sequences: 438
Number of extensions: 4356
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)