Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11c02
         (337 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   7.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    20   7.0  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    20   9.2  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    20   9.2  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    20   9.2  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    20   9.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    20   9.2  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -3

Query: 161 VILLQDIHIGRILIFECDMTIYHIFCITYGSYFGAY 54
           +IL  ++H+    + E  +    IF  T   Y+G +
Sbjct: 179 IILADELHLTEYKLVEKWVNSSEIFYTTSQQYYGHF 214


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 106 ISHSKIKMRPMWI 144
           + H+KI +RP W+
Sbjct: 222 LRHTKIWLRPDWL 234


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 157 ITILPLVSEG*AQEDYWNWPHASFEDCQE 243
           + +LP +         +++P  SFED  E
Sbjct: 38  VLVLPSIERDQMMAATFDFPSLSFEDSDE 66


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 157 ITILPLVSEG*AQEDYWNWPHASFEDCQE 243
           + +LP +         +++P  SFED  E
Sbjct: 38  VLVLPSIERDQMMAATFDFPSLSFEDSDE 66


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 157 ITILPLVSEG*AQEDYWNWPHASFEDCQE 243
           + +LP +         +++P  SFED  E
Sbjct: 38  VLVLPSIERDQMMAATFDFPSLSFEDSDE 66


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 42  PQASVSAEIRPIRYAEDVVDRHITFKN 122
           P      E+RPI+  +D  + +  +KN
Sbjct: 131 PPGRFFCEVRPIKRVKDSTNCNCGWKN 157


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 92  IFCITYGSYFGAY 54
           +FCIT+G   G +
Sbjct: 245 VFCITFGLVAGQF 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,356
Number of Sequences: 438
Number of extensions: 1961
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)