Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11b24
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 31 0.12
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 1.1
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 1.4
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 27 2.5
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb... 27 3.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 4.3
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 26 5.7
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S... 25 7.6
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe... 25 10.0
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo... 25 10.0
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo... 25 10.0
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 441 EHGQKLIQDENSSYRDEHSAPFLYQTKSQLDL 536
EH KL +ENS + H PFL T +LDL
Sbjct: 1050 EHVSKLADEENSESKLIHEKPFLNSTPHKLDL 1081
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/100 (20%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Frame = +3
Query: 216 TMNPLAAKIHEDIIEAKNLYENIWDSLTEKEKVELLNDTLIK-------PDITLK--YSL 368
T+ PL+ + + +++ EN+ + ++K + +++++L K P+ + L
Sbjct: 674 TVTPLSGSVVDFLLKHSKTIENVSSNFSKKNRNVVVSESLTKSMEEVLTPEKFYERLSKL 733
Query: 369 LDTFNFDLNALPAEKNDLMSFFGREHGQKLIQDENSSYRD 488
L+ N DL L + +++F + G ++ D+ RD
Sbjct: 734 LEEENSDLGELKNHLDSIIAFGPKRVGPNILFDKTKKMRD 773
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 201 EDYFRTMNPLAAKIHEDIIEAKNLYENIWDSLTEK 305
+DY+ M+ L K+ D + N+ E + D TEK
Sbjct: 1608 QDYYCDMSDLQRKLLNDFVSQLNINEELEDDETEK 1642
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 505 NGAECSSLYEEFSSCINF*PCSRPKN 428
NG EC +LY + + ++ PCS P++
Sbjct: 45 NGVECDNLYLDMNGIVH--PCSHPED 68
>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 26.6 bits (56), Expect = 3.3
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +3
Query: 294 LTEKEKVELLNDTLIKPDITLKYSLLDTFNFDLNALPAEKNDLMSFFGREHGQKLIQDEN 473
L +E L+ + + K+ TFN D AEK +L++ +GR H LI D
Sbjct: 173 LVREEAACLVAEAQLSNTTREKFKQAMTFNLDALHEHAEKLNLIATYGR-HLLNLIDDTP 231
Query: 474 SSYRDEHSAPFLYQTKSQL 530
+ + A Y+T Q+
Sbjct: 232 VTPGEARPAYDGYETSRQI 250
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +3
Query: 453 KLIQDENSSYRDEHSAPFLYQTKSQLDLCVLSSYRVPKEKPTSPPPVMSELE 608
K I E + +E P + +T+ + V + K+K SPPP+++ +
Sbjct: 555 KAIVAEGPNNEEETKGPVIPETQETSEQQVHKTPSPEKQKVLSPPPIITNFD 606
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 25.8 bits (54), Expect = 5.7
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +3
Query: 315 ELLNDTLIKPDITLKYSLLDTFNFDLNA---LPAEKNDLMSFFGREHGQKLIQDENSSYR 485
+ +ND I PD+ L L + + +N P+E ++L++ E + +N+
Sbjct: 223 QCINDVAIHPDLQLDIHPLSVYRYLVNTGQLSPSEDDNLLT---NEEVSEFPAVKNAI-- 277
Query: 486 DEHSAPFLYQTKSQLDLCVLSSYRVP 563
E SA L TK LD + S +P
Sbjct: 278 QERSAQLLLLTKRFLDAVLNSIDEIP 303
>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 389
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 255 IEAKNLYENIWDSLTEKEKVELLNDTLIKP-DITL 356
I Y+ I+DSLT + +N T+I P +IT+
Sbjct: 342 INVAMFYQKIYDSLTAEYSSYCMNGTIITPSNITI 376
>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/52 (28%), Positives = 19/52 (36%)
Frame = +3
Query: 447 GQKLIQDENSSYRDEHSAPFLYQTKSQLDLCVLSSYRVPKEKPTSPPPVMSE 602
G K I N +RD L +L +C R E P P M+E
Sbjct: 136 GLKYIHSANVIHRDLKPGNLLVNADCELKICDFGLARGCSENPEENPGFMTE 187
>SPCC1020.03 |||mitochondrial iron ion
transporter|Schizosaccharomyces pombe|chr 3|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 546 SSYRVPKEKPTSPPPVMSELELSHSKVVSELKNALKSHELRSH 674
SS R + P P + S L H K E++NA++ H + SH
Sbjct: 7 SSARSCRAMPRFLPTLCSRL---HEKSGFEIRNAVRMHSVGSH 46
>SPAC30.02c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 281
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 222 NPLAAKIHEDIIEAKNLYENIWDSLTEKEKVELLNDTLIKPDITLKY 362
+PL +H+D A ++IW L + V+ T++KP + Y
Sbjct: 155 SPLFTVLHDD---ASCPIDDIWSVLIHNKNVKPNQATMVKPPAEVNY 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,135
Number of Sequences: 5004
Number of extensions: 45507
Number of successful extensions: 125
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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