Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11b24
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0286 + 21945699-21946213,21946255-21947542                       30   1.5  
07_03_1566 + 27766336-27766393,27766480-27766609,27766728-277667...    30   1.5  
11_06_0291 + 22008412-22012284                                         29   2.6  
03_03_0190 + 15293589-15293606,15293790-15293863,15294009-152941...    29   2.6  
11_06_0284 + 21909758-21913645                                         29   3.4  
12_01_0107 - 843820-846335,846400-846511                               29   4.5  
01_05_0736 - 24760576-24760690,24760885-24761108,24761188-247612...    29   4.5  

>11_06_0286 + 21945699-21946213,21946255-21947542
          Length = 600

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 525 QLDLCVLSSYRVPKEKPTSPPPVMSELELSHSKVVSELKNALKSHE 662
           +L+  VLSS  +         P   ELEL++S V +ELK A+++++
Sbjct: 546 ELEKMVLSSTSIESVSGVDVLPKFKELELNNSHVPNELKEAVENNK 591


>07_03_1566 +
           27766336-27766393,27766480-27766609,27766728-27766797,
           27767134-27767196,27767741-27767815,27768035-27768154,
           27768508-27768549,27768651-27768725,27768909-27769055,
           27769165-27769302,27769448-27769562,27769658-27769746,
           27770062-27770184
          Length = 414

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +3

Query: 291 SLTEKEKVELLNDTL----IKPDITLKYSLLDTFNFDLNALPAEKND 419
           S T  EKV+ L        +K ++  KYSL+DT   DL  +PA+  D
Sbjct: 166 SATMTEKVKKLRRACLKNPVKVEVASKYSLVDTLRQDLYVVPAKYKD 212


>11_06_0291 + 22008412-22012284
          Length = 1290

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +3

Query: 504  FLYQTKSQLDLCVLSSYRVPKEKPTSPPPVMSELELSHSKVVSELKNALKSHE 662
            F  ++  +L+  VLSS  +         P   ELEL++S V +E+K A+++++
Sbjct: 1229 FENRSACELEKMVLSSTSIESISGVDRLPKFKELELNNSPVPNEVKEAIENNK 1281


>03_03_0190 +
           15293589-15293606,15293790-15293863,15294009-15294138,
           15294834-15295088,15295184-15295453
          Length = 248

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
 Frame = +3

Query: 462 QDENSSYRDEHSAPFLYQTKSQLDLCVLSSYRVPKEKPTSPPPVMSELELS-------HS 620
           ++  S+     +AP  YQ  +   +       VP +KPTS   V  + ELS        S
Sbjct: 57  EEPGSAAAPGRAAPRNYQPVTVSHISFAEDGSVPPKKPTSVAEVAKQRELSGTLQSEADS 116

Query: 621 KVVSELKNALKSHELRSH 674
           K+  ++ NA KS EL  H
Sbjct: 117 KMKKQISNA-KSKELSGH 133


>11_06_0284 + 21909758-21913645
          Length = 1295

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 525  QLDLCVLSSYRVPKEKPTSPPPVMSELELSHSKVVSELKNALKSHE 662
            +L+  VLSS  +         P   ELEL++S V +E+K A+++++
Sbjct: 1241 ELEKMVLSSTTIESISGVDGLPKFEELELNNSPVPNEVKEAIENNK 1286


>12_01_0107 - 843820-846335,846400-846511
          Length = 875

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/74 (31%), Positives = 33/74 (44%)
 Frame = +3

Query: 369 LDTFNFDLNALPAEKNDLMSFFGREHGQKLIQDENSSYRDEHSAPFLYQTKSQLDLCVLS 548
           +D     LN L ++K  L + + +  G  L+Q E  SYR     P  +   S LD  ++ 
Sbjct: 570 MDDLRDQLNRLSSQKG-LENRY-KNKGPGLLQ-EQISYRHLEQHPCGFDGDSILDSDIID 626

Query: 549 SYRVPKEKPTSPPP 590
           SY      P  PPP
Sbjct: 627 SYYDQGNPPRYPPP 640


>01_05_0736 -
           24760576-24760690,24760885-24761108,24761188-24761248,
           24761909-24763992
          Length = 827

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = +3

Query: 405 AEKNDLMSFFG----REHGQKLIQDENSSYRDEHSAPFLYQTKSQLDLCVLSSYRVPKEK 572
           ++K+D  S  G    +EH QK  +DENS    E+      +   + +   L     P E 
Sbjct: 507 SKKDDTNSLEGESLNKEHEQKSKEDENSGLEGENVKKGFDKNNKESENSALEDANAPLED 566

Query: 573 PTSPPPVMSELELSHSKVVSELKNAL 650
             +     S  E+S  K   E   +L
Sbjct: 567 TRNASDAASLSEISEEKKTEEENGSL 592


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,443,110
Number of Sequences: 37544
Number of extensions: 250716
Number of successful extensions: 652
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)