Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11b24
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101319-1|AAC69354.2|  334|Caenorhabditis elegans Hypothetical ...    29   2.3  
AC024205-4|AAF36044.1|  311|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z68753-6|CAD45610.1|  597|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z68753-5|CAB54512.2|  613|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z68753-4|CAB54511.2|  606|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AY043268-1|AAK85706.1|  606|Caenorhabditis elegans CCR4 protein.       28   5.3  
Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL033514-7|CAA22114.1|  648|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AF101319-1|AAC69354.2|  334|Caenorhabditis elegans Hypothetical
           protein K08D9.4 protein.
          Length = 334

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +3

Query: 324 NDTLIKPDITL----KYSLLDTFNFDLNALPAEKNDLMSFFGREHGQKLIQDENSSYRDE 491
           +D LI+ +I      KY  L  FNF  N   +EK  +M  F  + G  +   +++ ++++
Sbjct: 259 SDHLIEKEIVFEALKKYQGLAHFNFKANITESEKQKIMESFKNQKGTSVFIAKDNHFQNK 318

Query: 492 HSAPFL 509
             A  L
Sbjct: 319 KRADLL 324


>AC024205-4|AAF36044.1|  311|Caenorhabditis elegans Hypothetical
           protein Y73C8B.1 protein.
          Length = 311

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +3

Query: 324 NDTLIKPDITL----KYSLLDTFNFDLNALPAEKNDLMSFFGREHGQKLIQDENSSYRDE 491
           +D LI+ +I      KY  L  FNF  N   +EK  +M  F  + G  +   +++ ++++
Sbjct: 236 SDHLIEKEIVFEALKKYQGLAHFNFKANITESEKQKIMESFKNQKGTSVFIAKDNHFQNK 295

Query: 492 HSAPFL 509
             A  L
Sbjct: 296 KRADLL 301


>Z68753-6|CAD45610.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC518.3c protein.
          Length = 597

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +3

Query: 264 KNLYENIWDSLTEKEKVELLND--TLIKPDIT--LKYSLLDTFNFDLNALPAEKNDLMS 428
           KNL  ++W  LT    + L N+  T + P+I      ++LD  N  L +LP E  D++S
Sbjct: 68  KNLSPSLWQ-LTHLSALFLNNNGLTRLPPEIAQLTNLTMLDISNNKLRSLPTELGDMIS 125


>Z68753-5|CAB54512.2|  613|Caenorhabditis elegans Hypothetical
           protein ZC518.3b protein.
          Length = 613

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +3

Query: 264 KNLYENIWDSLTEKEKVELLND--TLIKPDIT--LKYSLLDTFNFDLNALPAEKNDLMS 428
           KNL  ++W  LT    + L N+  T + P+I      ++LD  N  L +LP E  D++S
Sbjct: 84  KNLSPSLWQ-LTHLSALFLNNNGLTRLPPEIAQLTNLTMLDISNNKLRSLPTELGDMIS 141


>Z68753-4|CAB54511.2|  606|Caenorhabditis elegans Hypothetical
           protein ZC518.3a protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +3

Query: 264 KNLYENIWDSLTEKEKVELLND--TLIKPDIT--LKYSLLDTFNFDLNALPAEKNDLMS 428
           KNL  ++W  LT    + L N+  T + P+I      ++LD  N  L +LP E  D++S
Sbjct: 77  KNLSPSLWQ-LTHLSALFLNNNGLTRLPPEIAQLTNLTMLDISNNKLRSLPTELGDMIS 134


>AY043268-1|AAK85706.1|  606|Caenorhabditis elegans CCR4 protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +3

Query: 264 KNLYENIWDSLTEKEKVELLND--TLIKPDIT--LKYSLLDTFNFDLNALPAEKNDLMS 428
           KNL  ++W  LT    + L N+  T + P+I      ++LD  N  L +LP E  D++S
Sbjct: 77  KNLSPSLWQ-LTHLSALFLNNNGLTRLPPEIAQLTNLTMLDISNNKLRSLPTELGDMIS 134


>Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical
           protein F43G6.1b protein.
          Length = 1069

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 198 AEDYFRTMNPLAAKIHEDIIEAKNLYENIWDS-LTEKEKVEL 320
           +  +F    PL +K   +++E  ++ ENIWDS L  K K+++
Sbjct: 282 SNSFFSKREPLPSK--SELLEVYDIEENIWDSKLGLKGKIDV 321


>Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical
           protein F43G6.1a protein.
          Length = 1105

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 198 AEDYFRTMNPLAAKIHEDIIEAKNLYENIWDS-LTEKEKVEL 320
           +  +F    PL +K   +++E  ++ ENIWDS L  K K+++
Sbjct: 318 SNSFFSKREPLPSK--SELLEVYDIEENIWDSKLGLKGKIDV 357


>U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical
           protein T07F8.1 protein.
          Length = 822

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/73 (23%), Positives = 35/73 (47%)
 Frame = +3

Query: 252 IIEAKNLYENIWDSLTEKEKVELLNDTLIKPDITLKYSLLDTFNFDLNALPAEKNDLMSF 431
           ++E  +L ENI D  + +EK E LN++L K  +      +D+   ++       +D    
Sbjct: 41  VLEIDDLKENIKDQTSLREKAENLNESL-KTKVEDLAKKVDSIEGEIEFEKRSHSDTKKK 99

Query: 432 FGREHGQKLIQDE 470
            G+   +  +++E
Sbjct: 100 LGKFADETFVKEE 112


>AL033514-7|CAA22114.1|  648|Caenorhabditis elegans Hypothetical
           protein Y75B8A.7 protein.
          Length = 648

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = +3

Query: 300 EKEKVELLNDTLIKPDITLKYSLLDTFNFDLNALPAEKNDLMSFFGREHGQKLIQDENSS 479
           EKE+VE   +   K     K S++D   F+L+    E +D +    R  G+K  QDE   
Sbjct: 174 EKEEVEKATEQPKK----FKKSIVDDQFFNLD----EMHDFLQKTERAGGKKAAQDEEMM 225

Query: 480 YRDEHS 497
           + DE S
Sbjct: 226 FEDEDS 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,083,693
Number of Sequences: 27780
Number of extensions: 246717
Number of successful extensions: 684
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)