Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11b22
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 8/31 (25%)
 Frame = -3

Query: 100  GFPCSSTYLSVNVS--------WPNLNCPIL 32
            G P ++T+LS N +        WP+  CPIL
Sbjct: 1500 GIPPAATFLSPNSTTLVLRLHVWPDNGCPIL 1530


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 8/31 (25%)
 Frame = -3

Query: 100  GFPCSSTYLSVNVS--------WPNLNCPIL 32
            G P ++T+LS N +        WP+  CPIL
Sbjct: 1496 GIPPAATFLSPNSTTLVLRLHVWPDNGCPIL 1526


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 512 RHHRLQRVCVLGKCRNQFSHQLFVLFLLLFN 420
           +H  L R  V      +  HQ  VLF LL++
Sbjct: 85  KHGMLPRGQVFTMMNKEMRHQAVVLFRLLYS 115


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 512 RHHRLQRVCVLGKCRNQFSHQLFVLFLLLFN 420
           +H  L R  V      +  HQ  VLF LL++
Sbjct: 85  KHGMLPRGQVFTMMNKEMRHQAVVLFRLLYS 115


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 35  NRAVQIRPGHVYAEVRARARKPASQVC 115
           NR  +I        VR R   PASQVC
Sbjct: 603 NRIARIFDSASRTAVRPRYISPASQVC 629


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 35  NRAVQIRPGHVYAEVRARARKPASQVC 115
           NR  +I        VR R   PASQVC
Sbjct: 693 NRIARIFDSASRTAVRPRYISPASQVC 719


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/51 (21%), Positives = 22/51 (43%)
 Frame = +3

Query: 444 KQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKD 596
           KQ+    I  F+ H N L  +      +  +   F+   + ++D + + KD
Sbjct: 145 KQICRPKIHVFSLHDNKLITMYRFPQNQFKESSLFVTIAVDVRDTEDKCKD 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,657
Number of Sequences: 438
Number of extensions: 3521
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)